Os04g0609900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0609900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.33 | 0.4 | 7.1 | -0.778 | 0.455 | 0.646 | 0.855 | -0.85 | 0.0817 | 3.45 | 25 | 522 | -- | -- |
| 74.47 | 0.402 | 7.11 | -0.932 | 0.501 | 0.644 | 0.959 | -- | 0.0605 | 3.19 | 24.9 | 543 | -- | -- |
| 74.24 | 0.401 | 7.11 | -0.872 | 0.409 | 0.641 | -- | -0.547 | 0.0751 | 3.66 | 25 | 461 | -- | -- |
| 74.78 | 0.403 | 7.13 | -1.05 | 0.414 | 0.596 | -- | -- | 0.00628 | 3.91 | 24.9 | 451 | -- | -- |
| 78.44 | 0.412 | 7.1 | -0.909 | -- | 0.752 | -- | -0.333 | 0.124 | -- | 25.1 | 335 | -- | -- |
| 88.8 | 0.442 | 7.18 | -1.23 | 0.697 | -- | 0.642 | -- | -0.253 | 4.93 | -- | -- | -- | -- |
| 89.8 | 0.444 | 7.18 | -1.23 | 0.703 | -- | -- | -- | -0.256 | 5.1 | -- | -- | -- | -- |
| 78.75 | 0.413 | 7.11 | -1 | -- | 0.738 | -- | -- | 0.0959 | -- | 25.1 | 328 | -- | -- |
| 101.27 | 0.469 | 7.09 | -- | 0.424 | 0.765 | -- | -- | 0.192 | 3.46 | 24.5 | 489 | -- | -- |
| 115.72 | 0.503 | 7.19 | -1.2 | -- | -- | -- | -- | -0.238 | -- | -- | -- | -- | -- |
| 129.58 | 0.532 | 7.15 | -- | 0.682 | -- | -- | -- | -0.119 | 5.16 | -- | -- | -- | -- |
| 104.33 | 0.476 | 7.08 | -- | -- | 0.851 | -- | -- | 0.255 | -- | 24.91 | 345 | -- | -- |
| 153.92 | 0.579 | 7.16 | -- | -- | -- | -- | -- | -0.104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.73 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 19 |
| 2 | 72.73 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 21 |
| 5 | 73.14 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 23 |
| 11 | 73.39 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 22 |
| 14 | 73.44 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 23 |
| 33 | 73.74 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 23 |
| 46 | 73.86 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 23 |
| 52 | 73.87 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 23 |
| 56 | 73.92 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 64 | 73.94 | temperature | 25 | 270 | < th | dose independent | rect. | 20 | 23 |
| 73 | 74.01 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 23 |
| 80 | 74.04 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 115 | 74.22 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 23 |
| 154 | 74.47 | temperature | 25 | 720 | > th | dose independent | rect. | 24 | 23 |
| 185 | 74.65 | temperature | 20 | 30 | > th | dose dependent | rect. | 22 | 22 |
| 247 | 75.09 | temperature | 25 | 720 | > th | dose independent | sin | 10 | NA |
| 259 | 75.14 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 10 |
| 260 | 75.14 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 321 | 75.49 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 14 |
| 343 | 75.57 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 14 |
| 344 | 75.58 | temperature | 25 | 1440 | > th | dose independent | sin | 13 | NA |
| 361 | 75.65 | temperature | 25 | 1440 | < th | dose independent | sin | 13 | NA |
| 402 | 75.80 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 407 | 75.82 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 18 |
| 432 | 75.95 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 16 |
| 464 | 76.02 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 471 | 76.04 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 17 |
| 558 | 76.19 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 578 | 76.22 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 663 | 76.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 691 | 76.43 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 723 | 76.48 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 10 |
| 731 | 76.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 793 | 76.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 832 | 76.64 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 833 | 76.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 889 | 76.74 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 979 | 76.88 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 988 | 76.89 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 989 | 76.89 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |