BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0609500 Os04g0609500|Os04g0609500
(457 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0609500 Transferase family protein 626 e-180
Os04g0609300 Transferase family protein 415 e-116
Os06g0184900 Transferase family protein 74 2e-13
>Os04g0609500 Transferase family protein
Length = 457
Score = 626 bits (1615), Expect = e-180, Method: Compositional matrix adjust.
Identities = 340/457 (74%), Positives = 340/457 (74%)
Query: 1 MVKEEQGGEXXXXXXXXXXXXXXXXLPTQEHRXXXXXXXXXXXXXXXXXXXCYRHPAPSX 60
MVKEEQGGE LPTQEHR CYRHPAPS
Sbjct: 1 MVKEEQGGEVAMAAAAAVTTTVAPALPTQEHRLPLSNLDLLLPPLDVSVFLCYRHPAPSA 60
Query: 61 XXXXXXXXXXXVPFYPLAGEVVANGDGEPELLCSGRGVDFTESVAGEEMRGLRIGMVDER 120
VPFYPLAGEVVANGDGEPELLCSGRGVDFTESVAGEEMRGLRIGMVDER
Sbjct: 61 AALKEALAKALVPFYPLAGEVVANGDGEPELLCSGRGVDFTESVAGEEMRGLRIGMVDER 120
Query: 121 VEKLVPAKKAASVMAVQVTKFKCGGAVVGCTFDHRVCDAYSFNMFLVAWAAAARDXXXXX 180
VEKLVPAKKAASVMAVQVTKFKCGGAVVGCTFDHRVCDAYSFNMFLVAWAAAARD
Sbjct: 121 VEKLVPAKKAASVMAVQVTKFKCGGAVVGCTFDHRVCDAYSFNMFLVAWAAAARDGHGGG 180
Query: 181 XXXXXXXXXSFRRSIVAXXXXXXXXXXXTDALIDRLFAPLGSXXXXXXXXXXXXVNRIYR 240
SFRRSIVA TDALIDRLFAPLGS VNRIYR
Sbjct: 181 TAPPPPTIPSFRRSIVAPRDPPPPRSPSTDALIDRLFAPLGSAPPPPDDAAAAAVNRIYR 240
Query: 241 VXXXXXXXXXXXXGPGRTKLEAFTAHLWQLNXXXXXXXXXXPCCMGVVVDGRGRMFPDGA 300
V GPGRTKLEAFTAHLWQLN PCCMGVVVDGRGRMFPDGA
Sbjct: 241 VAAADAASLQDSAGPGRTKLEAFTAHLWQLNARAAAAERERPCCMGVVVDGRGRMFPDGA 300
Query: 301 MRAYFGNVLTIPYGVMGSGELRAAALADVAGDVHRWVAEAATGDHFRGLVDWVEXXXXXX 360
MRAYFGNVLTIPYGVMGSGELRAAALADVAGDVHRWVAEAATGDHFRGLVDWVE
Sbjct: 301 MRAYFGNVLTIPYGVMGSGELRAAALADVAGDVHRWVAEAATGDHFRGLVDWVEARRPKP 360
Query: 361 XXXXXYLGGTGGGDAAACIVSSGMGFPVGEADFGTGAPAFASYHFPWPAGAGYVMPMPSA 420
YLGGTGGGDAAACIVSSGMGFPVGEADFGTGAPAFASYHFPWPAGAGYVMPMPSA
Sbjct: 361 AAARAYLGGTGGGDAAACIVSSGMGFPVGEADFGTGAPAFASYHFPWPAGAGYVMPMPSA 420
Query: 421 RGDGDWVVYVHVSPELAVAMDEEPTVFRSLDNSYVFG 457
RGDGDWVVYVHVSPELAVAMDEEPTVFRSLDNSYVFG
Sbjct: 421 RGDGDWVVYVHVSPELAVAMDEEPTVFRSLDNSYVFG 457
>Os04g0609300 Transferase family protein
Length = 466
Score = 415 bits (1067), Expect = e-116, Method: Compositional matrix adjust.
Identities = 247/393 (62%), Positives = 267/393 (67%), Gaps = 18/393 (4%)
Query: 72 VPFYPLAGEVVANGDGEPELLCSGRGVDFTESVAGEE-MRGLRIGMVDERVEKLVPAKKA 130
V +YPLAGEVVAN GE ELLCSGRGVDF E+ AG+ +R LR+ +VDE EKLVP KKA
Sbjct: 81 VAYYPLAGEVVANTRGEGELLCSGRGVDFAEATAGDAVLRQLRLAVVDESAEKLVPKKKA 140
Query: 131 ASVMAVQVTKFKCGGAVVGCTFDHRVCDAYSFNMFLVAWAAAARDXXXXXXXXXXXXXXS 190
VM VQVTKFKCGGAVVGCTFDHRVCDAYSFNMFLVAWAAAA S
Sbjct: 141 G-VMCVQVTKFKCGGAVVGCTFDHRVCDAYSFNMFLVAWAAAA-------RGSSAAPAPS 192
Query: 191 FRRSIVAXXXXXXXXXXXTDALIDRLFAPLGSXXXXXXXXXXXX---VNRIYRVXXXXXX 247
F RS +A DAL DRLF P+ VNRI+RV
Sbjct: 193 FDRSFLAPTSPAPPC---PDALSDRLFVPVSCVPAPPSSAPEAAAAAVNRIFRVAAADVA 249
Query: 248 XXXXXXGPGRTKLEAFTAHLWQLNXXXXXX--XXXXPCCMGVVVDGRGRMFPDGAMRAYF 305
GPGRTKLEAFTAHLWQL+ CCMGVVVDGR R+ DGAM AYF
Sbjct: 250 ALQAAAGPGRTKLEAFTAHLWQLHARAAASPPRHRRSCCMGVVVDGRTRLRRDGAMGAYF 309
Query: 306 GNVLTIPYGVMGSGELRAAALADVAGDVHRWVAEAATGDHFRGLVDWVEXXXXXXXXXXX 365
GNVLTIPYG M SG+L A LADVAGDVHRWVAEAAT DHFRGLVDWVE
Sbjct: 310 GNVLTIPYGAMSSGDLSAMPLADVAGDVHRWVAEAATRDHFRGLVDWVEQLRPEPSVARA 369
Query: 366 YLGGTGGGDAAACIVSSGMGFPVGEADFGTGAPAFASYHFPWPAGAGYVMPMPSARGDGD 425
YLGG GG +AAAC+VSSGM PVGE DFG G PAFASYHFPWP GAGYVMPMPSARGDGD
Sbjct: 370 YLGGDGGAEAAACVVSSGMRMPVGEVDFGRGRPAFASYHFPWPGGAGYVMPMPSARGDGD 429
Query: 426 WVVYVHVSPELAVAM-DEEPTVFRSLDNSYVFG 457
WVVYVH + E+ AM +EE TVFR+L++ YVFG
Sbjct: 430 WVVYVHAAAEVVKAMEEEETTVFRALESDYVFG 462
>Os06g0184900 Transferase family protein
Length = 445
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 72 VPFYPLAGEVVANGDGEPELLCSGRGVDFTESVAGEEMRGL-RIGMVDERVEKLVPAKK- 129
VPFYPLAG + + G PE+ C+G GV F + +G + L + DE LVPA
Sbjct: 68 VPFYPLAGRLAQDSAGRPEISCTGEGVLFVTARSGATIDDLGDLAPSDELRRMLVPAADV 127
Query: 130 -AASVMAV-QVTKFKCGGAVVGCTFDHRVCDAYSFNMFLVAWAAAARD 175
AAS++A+ QVT F+CGG +G H D + F+ WAA ARD
Sbjct: 128 AAASILAMFQVTFFRCGGVCLGAAIHHTAADGLAALDFVNTWAAIARD 175
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,882,401
Number of extensions: 624024
Number of successful extensions: 1556
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1575
Number of HSP's successfully gapped: 5
Length of query: 457
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 353
Effective length of database: 11,605,545
Effective search space: 4096757385
Effective search space used: 4096757385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)