FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0184900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.33 (0.0696) R2 : 0.435
β1 : 2.37 (0.202) R2dD : 0.686 R2D : -3.73
β2 : -- (--) R2dC : -- R2C : --
β3 : 55 (3.05) R2dE : 86.3 R2E : -86.3
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 116 (6.44) R2dD*E : 82.3 R2D*E : -80.9
γ1 : 0.192 (0.0613) R2dN8 : 0.016 R2N8 : -2.82
σ : 0.524
deviance : 126.77
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.7242
memory length : 1181
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10.1
open length of G : 1.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.17 0.493 4.32 2.42 0.442 55 -1.44 116 0.182 7.85 0.6992 1181 10.1 1.06
2597.8 2.37 2.7 -2.76 0.493 47.1 -0.973 -- -0.181 0.607 7.931 22 10.2 1.73
115.9 0.501 4.32 2.4 0.447 55.3 -- 116 0.188 8.47 0.6461 1181 10.1 1.05
811.25 1.33 2.74 0.795 2.18 17.5 -- -- 1.66 5.88 0.09002 4 10.5 1.47
126.77 0.524 4.33 2.37 -- 55 -- 116 0.192 -- 0.7242 1181 10.1 1.1
199.49 0.662 3.18 -0.713 0.36 -- -1.11 -- 0.0271 7.06 -- -- -- --
202.21 0.666 3.18 -0.732 0.364 -- -- -- 0.0315 8.01 -- -- -- --
194.03 0.649 3.14 -0.433 -- 5.05 -- -- 0.103 -- 0.6473 8 12 1.97
202.68 0.667 3.16 -- 0.364 3.71 -- -- 0.123 7.83 3.876e-05 8 12.1 2.48
209.44 0.676 3.19 -0.728 -- -- -- -- 0.0361 -- -- -- -- --
216.31 0.688 3.16 -- 0.359 -- -- -- 0.113 8.16 -- -- -- --
152.2 0.575 3.14 -- -- 2.69 -- -- 0.169 -- 0.7555 1109 12.2 2.86
223.42 0.698 3.17 -- -- -- -- -- 0.117 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 122.10 radiation 1 1440 < th dose independent rect. 10 1
2 122.10 radiation 1 1440 < th dose dependent rect. 10 1
3 122.76 radiation 1 1440 < th dose independent rect. 9 3
4 122.76 radiation 1 1440 < th dose dependent rect. 9 3
11 125.36 radiation 1 1440 > th dose independent rect. 11 1
30 133.56 radiation 1 1440 > th dose independent rect. 13 1
31 133.73 radiation 1 1440 > th dose independent rect. 9 5
32 133.89 radiation 1 1440 < th dose independent rect. 13 1
33 133.89 radiation 1 1440 < th dose dependent rect. 13 1
74 142.77 humidity 80 1440 > th dose independent rect. 11 3
78 144.67 humidity 80 1440 < th dose independent rect. 11 3
80 145.53 radiation 1 1440 > th dose independent rect. 4 1
90 145.53 radiation 1 1440 > th dose dependent rect. 4 1
106 146.39 humidity 60 14400 < th dose independent rect. 6 1
108 146.39 humidity 60 14400 < th dose independent rect. 20 1
110 146.39 radiation 20 14400 > th dose independent rect. 17 1
161 146.39 humidity 60 14400 < th dose dependent rect. 6 1
163 146.39 humidity 60 14400 < th dose dependent rect. 20 1
165 146.39 radiation 20 14400 > th dose dependent rect. 17 1
228 147.51 humidity 60 14400 > th dose independent rect. 3 5
242 148.73 humidity 60 14400 > th dose independent rect. 7 1
252 149.28 humidity 60 14400 > th dose independent rect. 1 7
300 152.33 humidity 90 720 > th dose dependent rect. 12 1
307 152.84 humidity 60 14400 > th dose independent rect. 20 12
308 152.91 humidity 80 1440 < th dose independent rect. 9 5
309 153.02 humidity 80 1440 < th dose independent rect. 8 7
339 154.28 humidity 80 1440 < th dose independent rect. 2 14
348 154.58 humidity 60 14400 > th dose independent rect. 23 9
372 155.11 humidity 80 1440 > th dose independent rect. 9 6
395 156.41 humidity 90 720 > th dose dependent rect. 20 1
433 157.45 humidity 80 1440 > th dose independent rect. 2 15
436 157.54 humidity 80 1440 > th dose independent rect. 5 12
443 157.69 humidity 80 1440 < th dose independent sin 2 NA
469 158.03 radiation 1 1440 < th dose independent rect. 11 10
551 159.72 radiation 10 1440 < th dose independent rect. 19 10
578 160.12 radiation 10 1440 < th dose independent rect. 21 8
586 160.51 radiation 1 720 > th dose independent rect. 9 21
588 160.58 radiation 10 1440 < th dose dependent rect. 19 10
596 160.87 radiation 1 1440 < th dose dependent rect. 11 10
604 160.91 radiation 10 1440 < th dose dependent rect. 21 8
616 161.19 humidity 80 1440 > th dose independent sin 2 NA
682 162.05 radiation 10 1440 < th dose independent rect. 3 2
802 163.27 humidity 80 4320 > th dose independent rect. 23 1
856 163.40 radiation 1 1440 > th dose independent sin 19 NA
857 163.40 radiation 1 1440 < th dose independent sin 19 NA
896 163.82 humidity 90 720 > th dose independent rect. 20 1
953 164.45 radiation 10 1440 < th dose dependent rect. 3 2
959 164.56 humidity 60 14400 > th dose independent rect. 20 2
963 164.59 radiation 1 90 < th dose dependent rect. 6 11
979 164.80 wind 7 4320 > th dose independent rect. 15 1
995 164.93 humidity 50 14400 > th dose dependent rect. 2 7