Os04g0609500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transferase family protein.
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Os04g0609500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 281.75 | 0.789 | 3.29 | 0.463 | 0.307 | 0.779 | -0.0156 | -0.906 | 0.452 | 18.2 | 24.8 | 1527 | -- | -- |
| 282.71 | 0.783 | 3.32 | 0.191 | 0.297 | 0.743 | -0.0384 | -- | 0.378 | 18.1 | 24.8 | 1519 | -- | -- |
| 281.75 | 0.782 | 3.29 | 0.462 | 0.305 | 0.778 | -- | -0.901 | 0.452 | 18.2 | 24.78 | 1523 | -- | -- |
| 282.69 | 0.783 | 3.33 | 0.195 | 0.3 | 0.731 | -- | -- | 0.369 | 18.2 | 24.8 | 1517 | -- | -- |
| 286.03 | 0.788 | 3.29 | 0.424 | -- | 0.767 | -- | -0.798 | 0.443 | -- | 24.7 | 1449 | -- | -- |
| 297.99 | 0.809 | 3.38 | -0.0615 | 0.322 | -- | 0.00636 | -- | 0.115 | 18 | -- | -- | -- | -- |
| 297.99 | 0.808 | 3.38 | -0.0616 | 0.322 | -- | -- | -- | 0.115 | 18 | -- | -- | -- | -- |
| 286.73 | 0.789 | 3.32 | 0.187 | -- | 0.737 | -- | -- | 0.368 | -- | 24.7 | 1421 | -- | -- |
| 283.51 | 0.784 | 3.33 | -- | 0.301 | 0.669 | -- | -- | 0.327 | 18.2 | 24.74 | 1517 | -- | -- |
| 303.37 | 0.814 | 3.38 | -0.071 | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
| 298.09 | 0.808 | 3.38 | -- | 0.323 | -- | -- | -- | 0.122 | 18 | -- | -- | -- | -- |
| 287.52 | 0.79 | 3.33 | -- | -- | 0.676 | -- | -- | 0.331 | -- | 24.64 | 1420 | -- | -- |
| 303.5 | 0.813 | 3.38 | -- | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 277.98 | temperature | 10 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 2 | 278.35 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 18 |
| 6 | 279.15 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 16 |
| 12 | 279.39 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 21 |
| 21 | 279.86 | radiation | 30 | 4320 | < th | dose dependent | rect. | 2 | 3 |
| 23 | 279.94 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 22 |
| 30 | 280.17 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 22 |
| 32 | 280.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 15 |
| 33 | 280.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 16 |
| 38 | 280.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 50 | 280.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 18 |
| 67 | 280.85 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 3 |
| 73 | 280.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 12 |
| 116 | 281.19 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 22 |
| 140 | 281.36 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 19 |
| 146 | 281.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 149 | 281.40 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 20 |
| 174 | 281.50 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 198 | 281.64 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 200 | 281.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 212 | 281.69 | radiation | 1 | 4320 | < th | dose independent | rect. | 2 | 3 |
| 234 | 281.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 2 |
| 235 | 281.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 2 |
| 241 | 281.86 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 242 | 281.86 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 16 |
| 268 | 281.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 284 | 282.04 | temperature | 25 | 1440 | < th | dose independent | rect. | 1 | 16 |
| 297 | 282.07 | temperature | 25 | 1440 | < th | dose independent | rect. | 1 | 19 |
| 309 | 282.10 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 321 | 282.15 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 325 | 282.16 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 23 |
| 327 | 282.16 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 352 | 282.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 16 |
| 363 | 282.30 | radiation | 10 | 4320 | < th | dose dependent | rect. | 21 | 9 |
| 373 | 282.32 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 374 | 282.32 | radiation | 10 | 4320 | < th | dose dependent | rect. | 19 | 11 |
| 376 | 282.33 | temperature | 25 | 90 | < th | dose independent | rect. | 14 | 22 |
| 395 | 282.35 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 407 | 282.38 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 432 | 282.44 | temperature | 25 | 1440 | < th | dose independent | sin | 1 | NA |
| 483 | 282.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 484 | 282.54 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 497 | 282.55 | temperature | 25 | 720 | < th | dose dependent | sin | 1 | NA |
| 504 | 282.57 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 521 | 282.61 | temperature | 25 | 1440 | > th | dose independent | rect. | 1 | 16 |
| 528 | 282.62 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 539 | 282.64 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 586 | 282.72 | temperature | 25 | 1440 | > th | dose independent | rect. | 1 | 19 |
| 601 | 282.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 22 |
| 623 | 282.79 | temperature | 25 | 1440 | > th | dose independent | sin | 0 | NA |
| 635 | 282.80 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 22 |
| 644 | 282.82 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 10 |
| 666 | 282.86 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 718 | 282.92 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 745 | 282.95 | radiation | 1 | 4320 | < th | dose independent | rect. | 19 | 10 |
| 750 | 282.96 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 775 | 282.99 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 12 |
| 778 | 282.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 8 |
| 817 | 283.03 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 20 |
| 819 | 283.04 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 825 | 283.04 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 879 | 283.09 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 918 | 283.15 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 922 | 283.15 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 15 |
| 943 | 283.16 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 5 |