BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0608300 Os04g0608300|AK111353
         (176 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0608300  Galactokinase family protein                        258   2e-69
Os02g0143400  Auxin responsive SAUR protein family protein         91   4e-19

>Os04g0608300 Galactokinase family protein
          Length = 176

 Score =  258 bits (658), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 137/176 (77%), Positives = 137/176 (77%)

Query: 1   MEEQQHLHPGGGGGKKSNKITEIVRLQQMLKKWRKLSVAPXXXXXXXXXXXXXXXXXXXF 60
           MEEQQHLHPGGGGGKKSNKITEIVRLQQMLKKWRKLSVAP                   F
Sbjct: 1   MEEQQHLHPGGGGGKKSNKITEIVRLQQMLKKWRKLSVAPKDAAATAGNGGGGESKAKKF 60

Query: 61  LKRTLSFTDGGASPGGTPPPRGHLAVCVGPTAQRFVIPTDYLKHXXXXXXXXXXXXXXXX 120
           LKRTLSFTDGGASPGGTPPPRGHLAVCVGPTAQRFVIPTDYLKH                
Sbjct: 61  LKRTLSFTDGGASPGGTPPPRGHLAVCVGPTAQRFVIPTDYLKHRAFAALLREAEEEFGF 120

Query: 121 XXXXVLRIPCEVPAFEAILKAVEKNKKDNAAAFCYCSYEYAADEVALGAPNNPLCR 176
               VLRIPCEVPAFEAILKAVEKNKKDNAAAFCYCSYEYAADEVALGAPNNPLCR
Sbjct: 121 QQEGVLRIPCEVPAFEAILKAVEKNKKDNAAAFCYCSYEYAADEVALGAPNNPLCR 176



>Os02g0143400 Auxin responsive SAUR protein family protein
          Length = 130

 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 68/149 (45%), Gaps = 28/149 (18%)

Query: 12  GGGKKSNKITEIVRLQQMLKKWRKLSVAPXXXXXXXXXXXXXXXXXXXFLKRTLSFTDGG 71
           GG   SNKI +IVRL Q+LK+W++ ++AP                               
Sbjct: 5   GGRASSNKIRDIVRLHQLLKRWKRAALAPKAGKNN------------------------- 39

Query: 72  ASPGGTPPPRGHLAVCVGPTAQRFVIPTDYLKHXXXXXXXXXXXXXXXXXXXXVLRIPCE 131
            + GG   P+G  AVCVG   +RFVIPT+YL H                     LRIPC+
Sbjct: 40  -NGGGASVPKGFFAVCVGEEMRRFVIPTEYLGHWAFEQLLRKAEEEFGFQHEGALRIPCD 98

Query: 132 VPAFEAILKAVEKNKKDNAAAFCYCSYEY 160
           V  FE IL+ V   +KD  AA CY S E+
Sbjct: 99  VEVFEGILRLV--GRKDEKAAMCYSSSEH 125



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,261,115
Number of extensions: 211538
Number of successful extensions: 911
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 909
Number of HSP's successfully gapped: 2
Length of query: 176
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 82
Effective length of database: 12,127,685
Effective search space: 994470170
Effective search space used: 994470170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)