Os04g0608300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactokinase family protein.
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Os04g0608300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Galactokinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 217.26 | 0.687 | 6.27 | 3.32 | 1.34 | -0.0969 | -1.75 | 2.8 | 1.02 | 22.8 | 20 | 90 | -- | -- |
| 233.09 | 0.717 | 6.27 | 3.27 | 1.4 | -0.15 | 0.361 | -- | 1.03 | 23 | 17.48 | 321 | -- | -- |
| 221.99 | 0.694 | 6.28 | 3.17 | 1.31 | -0.089 | -- | 2.82 | 0.984 | 22.9 | 29.75 | 454 | -- | -- |
| 233.01 | 0.716 | 6.26 | 3.31 | 1.31 | -0.498 | -- | -- | 1.04 | 22.9 | 58.83 | 394 | -- | -- |
| 282.01 | 0.782 | 6.25 | 3.35 | -- | 0.835 | -- | 1.98 | 0.978 | -- | 20.94 | 44 | -- | -- |
| 233.98 | 0.717 | 6.27 | 3.28 | 1.29 | -- | 0.295 | -- | 1.03 | 22.9 | -- | -- | -- | -- |
| 234.33 | 0.717 | 6.27 | 3.27 | 1.28 | -- | -- | -- | 1.02 | 22.8 | -- | -- | -- | -- |
| 250.44 | 0.74 | 6.23 | 3.31 | -- | 0.875 | -- | -- | 1.05 | -- | 1.11 | 55 | -- | -- |
| 512.23 | 1.06 | 6.35 | -- | 1.27 | 0.771 | -- | -- | 0.645 | 23 | 58.83 | 394 | -- | -- |
| 336.59 | 0.857 | 6.23 | 3.29 | -- | -- | -- | -- | 1.03 | -- | -- | -- | -- | -- |
| 515.5 | 1.06 | 6.35 | -- | 1.31 | -- | -- | -- | 0.661 | 23 | -- | -- | -- | -- |
| 527.8 | 1.07 | 6.27 | -- | -- | 0.99 | -- | -- | 0.777 | -- | 7.94 | 30 | -- | -- |
| 622.64 | 1.16 | 6.32 | -- | -- | -- | -- | -- | 0.668 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 203.82 | radiation | 30 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 17 | 203.97 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 18 | 204.02 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 22 | 204.11 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 25 | 204.13 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 6 | 5 |
| 31 | 204.15 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 6 | 6 |
| 48 | 204.19 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 52 | 204.21 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 9 | 3 |
| 169 | 204.41 | atmosphere | 995 | 14400 | > th | dose dependent | sin | 2 | NA |
| 200 | 204.44 | atmosphere | 1015 | 14400 | < th | dose dependent | sin | 3 | NA |
| 391 | 204.55 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 488 | 204.59 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 4 | 21 |
| 544 | 204.61 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 15 | 22 |
| 573 | 204.63 | atmosphere | 995 | 14400 | > th | dose dependent | no | NA | NA |
| 656 | 204.66 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 799 | 204.73 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 833 | 204.74 | atmosphere | 1015 | 14400 | < th | dose dependent | no | NA | NA |
| 940 | 204.78 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 9 | 23 |