BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0607400 Os04g0607400|AK109823
(320 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0607400 Conserved hypothetical protein 259 2e-69
Os01g0571900 132 3e-31
Os04g0415401 Conserved hypothetical protein 79 5e-15
>Os04g0607400 Conserved hypothetical protein
Length = 320
Score = 259 bits (661), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 170/320 (53%), Positives = 170/320 (53%)
Query: 1 TASGPPCXXXXXXXXXXXXXXLXXXXXXXXXEQTXXXXXXXXXXXXXPSFSLEXXXXXXX 60
TASGPPC L EQT PSFSLE
Sbjct: 1 TASGPPCRSRGRGDTGGDHRRLPPSSTSPPPEQTAGNRVAARKAAAGPSFSLEGAGRCPR 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXTGCGTAGXXXXXXXXXXXXXXXXPSPDPAVRSPP 120
TGCGTAG PSPDPAVRSPP
Sbjct: 61 PRPVGGGDGAAASASASGRWAGRAEATGCGTAGRRRLGAERRRRRRIWRPSPDPAVRSPP 120
Query: 121 GTMVAPKEXXXXXXXXXXXXXXXTRVASPDPGWGSGRRRGGAETGRQRQRHXXXXXXXXX 180
GTMVAPKE TRVASPDPGWGSGRRRGGAETGRQRQRH
Sbjct: 121 GTMVAPKEAGKGDAGGGKGGAAATRVASPDPGWGSGRRRGGAETGRQRQRHGGQATTAAA 180
Query: 181 XXXXXXXXXXXXXXXLVLASVMLRRRALAGHPLYLAGSGXXXXXXXXXXXMAAGRRDGCV 240
LVLASVMLRRRALAGHPLYLAGSG MAAGRRDGCV
Sbjct: 181 RSRRGRGAAVGVCQALVLASVMLRRRALAGHPLYLAGSGRPRPDPSPPRRMAAGRRDGCV 240
Query: 241 WTXXXXXXXXXXXXXXXGGFCRWWVLSLLMGGDVRMWKWQDDGLCWREAGMGLDVRDGDF 300
WT GGFCRWWVLSLLMGGDVRMWKWQDDGLCWREAGMGLDVRDGDF
Sbjct: 241 WTASAAAARWRPASCSAGGFCRWWVLSLLMGGDVRMWKWQDDGLCWREAGMGLDVRDGDF 300
Query: 301 LIVGRVFSLSSVSPLGRTLF 320
LIVGRVFSLSSVSPLGRTLF
Sbjct: 301 LIVGRVFSLSSVSPLGRTLF 320
>Os01g0571900
Length = 170
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 69/90 (76%)
Query: 231 MAAGRRDGCVWTXXXXXXXXXXXXXXXGGFCRWWVLSLLMGGDVRMWKWQDDGLCWREAG 290
MAAGR DGCVWT GGFCRWWV LLMG DVRMWKW+DDGLCWREAG
Sbjct: 1 MAAGRWDGCVWTASAAAARWQPASYSAGGFCRWWVSLLLMGSDVRMWKWRDDGLCWREAG 60
Query: 291 MGLDVRDGDFLIVGRVFSLSSVSPLGRTLF 320
M LDVRDGDFLIVGRVFSLS VSPLGRTLF
Sbjct: 61 MVLDVRDGDFLIVGRVFSLSLVSPLGRTLF 90
>Os04g0415401 Conserved hypothetical protein
Length = 232
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%)
Query: 270 MGGDVRMWKWQDDGLCWREAGMGLDVRDGDFLIVGRVFSLSSVS 313
MGGDVRMW W+DDGLCWREAG+GLDVR GDFL+ RVFSL SVS
Sbjct: 175 MGGDVRMWSWRDDGLCWREAGIGLDVRGGDFLVADRVFSLISVS 218
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,431,627
Number of extensions: 260209
Number of successful extensions: 786
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 782
Number of HSP's successfully gapped: 3
Length of query: 320
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 219
Effective length of database: 11,762,187
Effective search space: 2575918953
Effective search space used: 2575918953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)