Os04g0607400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0607400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.97 | 0.225 | 12.5 | 0.764 | 0.94 | -0.314 | -0.239 | -0.678 | 0.162 | 0.679 | 34.59 | 5032 | -- | -- |
| 23.76 | 0.227 | 12.5 | 0.806 | 0.936 | -0.299 | -0.238 | -- | 0.173 | 0.661 | 34.61 | 5026 | -- | -- |
| 23.2 | 0.224 | 12.5 | 0.769 | 0.942 | -0.312 | -- | -0.685 | 0.164 | 0.692 | 34.66 | 5061 | -- | -- |
| 23.82 | 0.227 | 12.5 | 0.82 | 0.925 | -0.355 | -- | -- | 0.176 | 0.671 | 31.32 | 4966 | -- | -- |
| 61.99 | 0.369 | 12.5 | 0.931 | -- | -0.675 | -- | 0.00419 | 0.144 | -- | 34.66 | 5061 | -- | -- |
| 26.67 | 0.242 | 12.5 | 0.853 | 0.938 | -- | -0.235 | -- | 0.125 | 0.846 | -- | -- | -- | -- |
| 26.9 | 0.243 | 12.5 | 0.861 | 0.939 | -- | -- | -- | 0.126 | 0.868 | -- | -- | -- | -- |
| 61.96 | 0.368 | 12.5 | 0.932 | -- | -0.629 | -- | -- | 0.163 | -- | 31.32 | 4966 | -- | -- |
| 34.13 | 0.272 | 12.6 | -- | 1 | -0.634 | -- | -- | 0.113 | 0.93 | 39.99 | 30358 | -- | -- |
| 81.85 | 0.423 | 12.5 | 0.896 | -- | -- | -- | -- | 0.143 | -- | -- | -- | -- | -- |
| 46.44 | 0.319 | 12.6 | -- | 0.952 | -- | -- | -- | 0.0298 | 0.908 | -- | -- | -- | -- |
| 84.13 | 0.429 | 12.6 | -- | -- | -0.723 | -- | -- | 0.0286 | -- | 39.99 | 30358 | -- | -- |
| 103.01 | 0.474 | 12.6 | -- | -- | -- | -- | -- | 0.0439 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.67 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 2 | 21.67 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 3 | 21.69 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 7 | 21.70 | temperature | 30 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 10 | 21.72 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 29 | 21.77 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 95 | 22.76 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 14 |
| 122 | 22.88 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 128 | 22.90 | radiation | 10 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 142 | 22.96 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 9 |
| 154 | 22.96 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 156 | 22.97 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 157 | 22.97 | radiation | 10 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 159 | 22.97 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 6 |
| 168 | 22.98 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 6 |
| 184 | 22.99 | temperature | 30 | 4320 | < th | dose independent | sin | 7 | NA |
| 197 | 23.01 | radiation | 20 | 4320 | > th | dose independent | rect. | 15 | 21 |
| 210 | 23.03 | temperature | 30 | 270 | < th | dose independent | sin | 8 | NA |
| 214 | 23.04 | temperature | 30 | 4320 | > th | dose independent | sin | 7 | NA |
| 217 | 23.04 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 229 | 23.05 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 21 |
| 230 | 23.05 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 272 | 23.06 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 7 |
| 281 | 23.07 | temperature | 30 | 90 | < th | dose independent | sin | 3 | NA |
| 283 | 23.07 | radiation | 20 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 298 | 23.08 | radiation | 20 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 303 | 23.09 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 440 | 23.14 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 441 | 23.14 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 464 | 23.15 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 546 | 23.19 | radiation | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 582 | 23.20 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 3 |
| 629 | 23.21 | radiation | 10 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 656 | 23.22 | radiation | 40 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 664 | 23.23 | temperature | 30 | 10 | < th | dose independent | sin | 2 | NA |
| 666 | 23.23 | radiation | 20 | 4320 | > th | dose independent | rect. | 10 | 23 |
| 676 | 23.24 | radiation | 20 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 678 | 23.24 | radiation | 20 | 4320 | > th | dose independent | rect. | 8 | 8 |
| 681 | 23.24 | radiation | 20 | 4320 | < th | dose independent | rect. | 3 | 10 |
| 746 | 23.26 | radiation | 30 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 749 | 23.26 | radiation | 20 | 4320 | < th | dose independent | rect. | 8 | 8 |
| 757 | 23.26 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 15 |
| 759 | 23.26 | temperature | 30 | 10 | < th | dose independent | rect. | 2 | 16 |
| 776 | 23.27 | radiation | 20 | 4320 | > th | dose independent | sin | 0 | NA |
| 780 | 23.27 | radiation | 20 | 4320 | > th | dose independent | no | NA | NA |
| 907 | 23.27 | radiation | 20 | 4320 | < th | dose independent | rect. | 10 | 23 |
| 910 | 23.27 | radiation | 30 | 4320 | < th | dose dependent | rect. | 8 | 4 |
| 923 | 23.28 | radiation | 10 | 720 | > th | dose independent | rect. | 6 | 7 |
| 927 | 23.28 | temperature | 30 | 270 | < th | dose independent | rect. | 23 | 17 |
| 939 | 23.28 | radiation | 20 | 270 | < th | dose dependent | rect. | 20 | 22 |