Os01g0571900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os01g0571900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.88 | 0.257 | 14.5 | -0.117 | 1.17 | 0.613 | 0.0871 | -6.01 | 0.3 | 0.229 | 27 | 4103 | -- | -- |
| 34.11 | 0.274 | 14.4 | 1.15 | 1.11 | -0.306 | -0.0611 | -- | 0.503 | 24 | 27 | 4103 | -- | -- |
| 29.91 | 0.255 | 14.5 | -0.113 | 1.17 | 0.609 | -- | -5.96 | 0.301 | 0.224 | 27 | 4108 | -- | -- |
| 32.32 | 0.265 | 14.4 | 1.21 | 1.2 | -0.342 | -- | -- | 0.548 | 0.196 | 34.98 | 13800 | -- | -- |
| 96.95 | 0.461 | 14.3 | 1.37 | -- | -1.09 | -- | 0.727 | 0.602 | -- | 25.19 | 3786 | -- | -- |
| 35.39 | 0.279 | 14.4 | 1.12 | 1.18 | -- | -0.0032 | -- | 0.5 | 0.151 | -- | -- | -- | -- |
| 35.39 | 0.279 | 14.4 | 1.12 | 1.18 | -- | -- | -- | 0.5 | 0.152 | -- | -- | -- | -- |
| 97.18 | 0.461 | 14.3 | 1.29 | -- | -1.03 | -- | -- | 0.581 | -- | 25.19 | 3786 | -- | -- |
| 42.95 | 0.305 | 14.5 | -- | 1.16 | 0.809 | -- | -- | 0.134 | 0.147 | -0.2054 | 47520 | -- | -- |
| 122.68 | 0.518 | 14.4 | 1.15 | -- | -- | -- | -- | 0.518 | -- | -- | -- | -- | -- |
| 68.21 | 0.386 | 14.4 | -- | 1.19 | -- | -- | -- | 0.376 | 0.203 | -- | -- | -- | -- |
| 124.4 | 0.519 | 14.4 | -- | -- | 1.36 | -- | -- | 0.211 | -- | 9.658 | 928 | -- | -- |
| 157.8 | 0.586 | 14.4 | -- | -- | -- | -- | -- | 0.39 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.21 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 2 | 27.52 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 3 | 28.18 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 6 | 28.71 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 12 | 29.23 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 14 | 29.27 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 18 | 29.32 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 28 | 29.72 | humidity | 80 | 4320 | < th | dose independent | rect. | 21 | 14 |
| 32 | 29.77 | humidity | 70 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 33 | 29.77 | humidity | 70 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 40 | 29.85 | humidity | 80 | 4320 | > th | dose independent | rect. | 21 | 14 |
| 41 | 29.86 | humidity | 80 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 60 | 30.06 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 63 | 30.09 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 4 |
| 78 | 30.17 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 80 | 30.19 | radiation | 10 | 4320 | > th | dose independent | rect. | 8 | 3 |
| 88 | 30.23 | humidity | 80 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 126 | 30.31 | temperature | 25 | 270 | < th | dose dependent | sin | 10 | NA |
| 139 | 30.33 | humidity | 80 | 4320 | < th | dose dependent | rect. | 20 | 5 |
| 154 | 30.35 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 164 | 30.37 | temperature | 20 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 166 | 30.37 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 10 |
| 170 | 30.38 | radiation | 20 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 189 | 30.40 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 21 |
| 194 | 30.41 | radiation | 10 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 197 | 30.42 | temperature | 25 | 14400 | > th | dose dependent | sin | 3 | NA |
| 222 | 30.44 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 12 |
| 234 | 30.45 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 18 |
| 261 | 30.48 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 11 |
| 264 | 30.48 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 13 |
| 267 | 30.48 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 15 |
| 317 | 30.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 5 |
| 347 | 30.53 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 352 | 30.54 | humidity | 80 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 363 | 30.55 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 9 |
| 364 | 30.55 | temperature | 25 | 14400 | > th | dose independent | rect. | 1 | 11 |
| 365 | 30.55 | temperature | 25 | 14400 | > th | dose independent | rect. | 24 | 13 |
| 372 | 30.55 | temperature | 25 | 270 | < th | dose dependent | rect. | 18 | 15 |
| 377 | 30.56 | humidity | 80 | 4320 | < th | dose independent | sin | 8 | NA |
| 400 | 30.57 | humidity | 80 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 409 | 30.57 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 22 |
| 442 | 30.59 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 11 |
| 451 | 30.60 | temperature | 25 | 14400 | < th | dose independent | rect. | 3 | 9 |
| 496 | 30.62 | temperature | 25 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 538 | 30.63 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 23 |
| 539 | 30.64 | humidity | 80 | 4320 | > th | dose independent | sin | 8 | NA |
| 541 | 30.64 | temperature | 25 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 545 | 30.64 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 555 | 30.64 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 21 |
| 581 | 30.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 18 |
| 585 | 30.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 20 |
| 602 | 30.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 23 |
| 620 | 30.66 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 18 |
| 672 | 30.68 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 16 |
| 673 | 30.68 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 18 |
| 684 | 30.68 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 15 |
| 705 | 30.69 | temperature | 25 | 14400 | > th | dose independent | sin | 6 | NA |
| 721 | 30.69 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 726 | 30.69 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 13 |
| 870 | 30.73 | humidity | 80 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 922 | 30.74 | radiation | 10 | 4320 | < th | dose independent | rect. | 8 | 3 |