BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0571900 Os01g0571900|Os01g0571900
(170 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0571900 274 2e-74
Os04g0607400 Conserved hypothetical protein 133 8e-32
Os01g0200900 76 1e-14
Os04g0415401 Conserved hypothetical protein 71 4e-13
>Os01g0571900
Length = 170
Score = 274 bits (701), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 144/170 (84%), Positives = 144/170 (84%)
Query: 1 MAAGRWDGCVWTXXXXXXXXXXXXXXXGGFCRWWVSLLLMGSDVRMWKWRDDGLCWREAG 60
MAAGRWDGCVWT GGFCRWWVSLLLMGSDVRMWKWRDDGLCWREAG
Sbjct: 1 MAAGRWDGCVWTASAAAARWQPASYSAGGFCRWWVSLLLMGSDVRMWKWRDDGLCWREAG 60
Query: 61 MVLDVRDGDFLIVGRVFSLSLVSPLGRTLFWSWGMLWGGRRLRLAVEVCGGWMAFRGWPR 120
MVLDVRDGDFLIVGRVFSLSLVSPLGRTLFWSWGMLWGGRRLRLAVEVCGGWMAFRGWPR
Sbjct: 61 MVLDVRDGDFLIVGRVFSLSLVSPLGRTLFWSWGMLWGGRRLRLAVEVCGGWMAFRGWPR 120
Query: 121 ARLCRWLQSRCWRKPYRAFGRFDNGAPXXXXXXXXXXXMALFHILTNLSR 170
ARLCRWLQSRCWRKPYRAFGRFDNGAP MALFHILTNLSR
Sbjct: 121 ARLCRWLQSRCWRKPYRAFGRFDNGAPVGVVSLLGGVVMALFHILTNLSR 170
>Os04g0607400 Conserved hypothetical protein
Length = 320
Score = 133 bits (334), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 69/90 (76%)
Query: 1 MAAGRWDGCVWTXXXXXXXXXXXXXXXGGFCRWWVSLLLMGSDVRMWKWRDDGLCWREAG 60
MAAGR DGCVWT GGFCRWWV LLMG DVRMWKW+DDGLCWREAG
Sbjct: 231 MAAGRRDGCVWTASAAAARWRPASCSAGGFCRWWVLSLLMGGDVRMWKWQDDGLCWREAG 290
Query: 61 MVLDVRDGDFLIVGRVFSLSLVSPLGRTLF 90
M LDVRDGDFLIVGRVFSLS VSPLGRTLF
Sbjct: 291 MGLDVRDGDFLIVGRVFSLSSVSPLGRTLF 320
>Os01g0200900
Length = 245
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 39 LMGSDVRMWKWRDDGLCWREAGMVLDVRDGDFLIVGRVFSLSLVSPL-GRTLFWSWGMLW 97
L G + MW WRDDGLCWREAGM LDVR G VF P GRTLFWSWG L
Sbjct: 168 LKGGNAWMWSWRDDGLCWREAGMGLDVRGGLPRCWPSVFPFLRFPPFFGRTLFWSWGTLG 227
Query: 98 GGRRLRLAVEVCGGWMAF 115
GGRRLR AV VCGG +AF
Sbjct: 228 GGRRLRFAVGVCGGLIAF 245
>Os04g0415401 Conserved hypothetical protein
Length = 232
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 36/44 (81%)
Query: 40 MGSDVRMWKWRDDGLCWREAGMVLDVRDGDFLIVGRVFSLSLVS 83
MG DVRMW WRDDGLCWREAG+ LDVR GDFL+ RVFSL VS
Sbjct: 175 MGGDVRMWSWRDDGLCWREAGIGLDVRGGDFLVADRVFSLISVS 218
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.332 0.145 0.571
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,921,789
Number of extensions: 246435
Number of successful extensions: 586
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 583
Number of HSP's successfully gapped: 4
Length of query: 170
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 76
Effective length of database: 12,127,685
Effective search space: 921704060
Effective search space used: 921704060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 152 (63.2 bits)