BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0603400 Os04g0603400|AK107076
         (92 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0603400  Conserved hypothetical protein                      146   3e-36
Os04g0658200  Conserved hypothetical protein                       71   2e-13
Os08g0241300  Conserved hypothetical protein                       69   5e-13

>Os04g0603400 Conserved hypothetical protein
          Length = 92

 Score =  146 bits (369), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 1  MAWWRKKVVFPARRAWAAVSTRVRARKPGSGGSILKLHEDVQTCGYKDVQVMFEILKSEL 60
          MAWWRKKVVFPARRAWAAVSTRVRARKPGSGGSILKLHEDVQTCGYKDVQVMFEILKSEL
Sbjct: 1  MAWWRKKVVFPARRAWAAVSTRVRARKPGSGGSILKLHEDVQTCGYKDVQVMFEILKSEL 60

Query: 61 EESRAPTKQRK 71
          EESRAPTKQRK
Sbjct: 61 EESRAPTKQRK 71



>Os04g0658200 Conserved hypothetical protein
          Length = 92

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 1  MAWWRKKVVFPARRAWAAVSTRVRARKPGSG-GSILKLHEDVQTCGYKDVQVMFEILK 57
          M WW++ VV P +RAW  V+ R+R +K   G G ++KLH+D+QTC Y+DVQVM+EIL+
Sbjct: 1  MEWWQRAVVVPVKRAWVVVAARLRRKKQYDGRGVLVKLHDDIQTCAYEDVQVMWEILQ 58



>Os08g0241300 Conserved hypothetical protein
          Length = 91

 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 51/62 (82%), Gaps = 2/62 (3%)

Query: 1  MAWWRKKVVFPARRAWAA-VSTRVRARKPGSGGSILKLHEDVQTCGYKDVQVMFEILKSE 59
          M  WRKKV F ARRAWAA VS R+RARK GS G +LKLHEDVQTC YKDVQVMFE+L SE
Sbjct: 1  MEGWRKKVAFRARRAWAALVSGRLRARKQGSRG-LLKLHEDVQTCDYKDVQVMFEMLTSE 59

Query: 60 LE 61
          LE
Sbjct: 60 LE 61



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.130    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,736,144
Number of extensions: 86958
Number of successful extensions: 232
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 3
Length of query: 92
Length of database: 17,035,801
Length adjustment: 61
Effective length of query: 31
Effective length of database: 13,850,747
Effective search space: 429373157
Effective search space used: 429373157
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)