Os04g0658200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0658200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.08 | 0.297 | 2.71 | 0.0219 | 0.29 | 0.26 | -1.69 | -1.4 | 0.0551 | 12.9 | 1.74 | 90 | -- | -- |
| 42 | 0.304 | 2.73 | -0.0655 | 0.0427 | 0.0468 | -0.406 | -- | 0.0208 | 16.7 | 1.74 | 90 | -- | -- |
| 41.57 | 0.3 | 2.72 | -0.0502 | 0.359 | 0.306 | -- | -0.168 | 0.052 | 13.4 | 0.4066 | 90 | -- | -- |
| 41.36 | 0.3 | 2.72 | -0.0455 | 0.352 | 0.307 | -- | -- | 0.0397 | 12.9 | 0.4001 | 90 | -- | -- |
| 42.47 | 0.305 | 2.73 | -0.0672 | -- | 0.0441 | -- | -0.0403 | 0.0177 | -- | 0.4066 | 90 | -- | -- |
| 42.21 | 0.305 | 2.73 | -0.07 | 0.0325 | -- | -0.421 | -- | 0.0193 | 17.4 | -- | -- | -- | -- |
| 42.62 | 0.306 | 2.73 | -0.0696 | 0.0368 | -- | -- | -- | 0.0173 | 19.6 | -- | -- | -- | -- |
| 42.4 | 0.303 | 2.73 | -0.0699 | -- | 0.0495 | -- | -- | 0.0158 | -- | 1.046e-06 | 70 | -- | -- |
| 41.42 | 0.3 | 2.72 | -- | 0.349 | 0.305 | -- | -- | 0.0446 | 12.9 | 0.36 | 90 | -- | -- |
| 42.69 | 0.305 | 2.73 | -0.0701 | -- | -- | -- | -- | 0.0167 | -- | -- | -- | -- | -- |
| 42.75 | 0.306 | 2.73 | -- | 0.0374 | -- | -- | -- | 0.025 | 19.5 | -- | -- | -- | -- |
| 42.52 | 0.304 | 2.73 | -- | -- | 0.0561 | -- | -- | 0.0184 | -- | 0.001302 | 70 | -- | -- |
| 42.82 | 0.305 | 2.72 | -- | -- | -- | -- | -- | 0.0245 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.55 | radiation | 1.0 | 10 | < th | dose independent | rect. | 13 | 1 |
| 11 | 29.55 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 25 | 29.78 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 28 | 29.87 | humidity | 80.0 | 90 | > th | dose independent | rect. | 12 | 1 |
| 94 | 33.18 | humidity | 80.0 | 10 | > th | dose independent | rect. | 14 | 1 |
| 148 | 36.21 | radiation | 20.0 | 10 | < th | dose independent | rect. | 14 | 1 |
| 168 | 36.77 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 14 | 1 |
| 170 | 36.92 | temperature | 25.0 | 10 | < th | dose independent | rect. | 13 | 1 |
| 216 | 37.45 | radiation | 20.0 | 90 | < th | dose independent | rect. | 12 | 1 |
| 224 | 37.64 | temperature | 25.0 | 90 | > th | dose independent | rect. | 19 | 1 |
| 243 | 37.82 | humidity | 80.0 | 90 | > th | dose independent | rect. | 12 | 9 |
| 253 | 37.99 | radiation | 20.0 | 10 | < th | dose independent | rect. | 12 | 3 |
| 281 | 38.32 | wind | 5.0 | 10 | > th | dose independent | rect. | 13 | 1 |
| 335 | 38.78 | wind | 3.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 345 | 38.83 | wind | 3.0 | 90 | < th | dose independent | rect. | 19 | 1 |
| 356 | 38.94 | wind | 3.0 | 90 | < th | dose dependent | rect. | 19 | 1 |
| 365 | 39.01 | wind | 3.0 | 10 | < th | dose dependent | rect. | 19 | 1 |
| 366 | 39.02 | wind | 5.0 | 90 | > th | dose independent | rect. | 13 | 1 |
| 369 | 39.03 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 19 | 19 |
| 401 | 39.20 | humidity | 80.0 | 10 | > th | dose independent | rect. | 20 | 1 |
| 409 | 39.26 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 1 |
| 458 | 39.37 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 465 | 39.40 | wind | 1.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 468 | 39.40 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 470 | 39.40 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 471 | 39.40 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 474 | 39.40 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 13 | 1 |
| 475 | 39.40 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 477 | 39.40 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 479 | 39.40 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 484 | 39.40 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 486 | 39.40 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 487 | 39.40 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 489 | 39.40 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 494 | 39.40 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 496 | 39.40 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 17 | 21 |
| 513 | 39.42 | humidity | 90.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 527 | 39.42 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 20 | 1 |
| 562 | 39.49 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 21 |
| 571 | 39.50 | radiation | 20.0 | 30 | < th | dose independent | rect. | 19 | 20 |
| 573 | 39.50 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 597 | 39.56 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 602 | 39.57 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 605 | 39.57 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 609 | 39.57 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 616 | 39.57 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 617 | 39.57 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 640 | 39.57 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 643 | 39.57 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 652 | 39.58 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 691 | 39.66 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 12 | 9 |
| 719 | 39.74 | radiation | 1.0 | 90 | > th | dose independent | rect. | 7 | 23 |
| 720 | 39.74 | radiation | 1.0 | 90 | < th | dose dependent | sin | 22 | NA |
| 764 | 39.87 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 777 | 39.89 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 18 | 23 |
| 778 | 39.90 | radiation | 1.0 | 90 | > th | dose independent | sin | 22 | NA |
| 779 | 39.90 | radiation | 20.0 | 10 | < th | dose independent | rect. | 10 | 5 |
| 781 | 39.90 | humidity | 80.0 | 90 | > th | dose independent | rect. | 12 | 17 |
| 787 | 39.91 | humidity | 80.0 | 90 | > th | dose independent | sin | 20 | NA |
| 790 | 39.92 | radiation | 1.0 | 90 | < th | dose independent | sin | 22 | NA |
| 800 | 39.93 | humidity | 80.0 | 90 | > th | dose independent | rect. | 18 | 20 |
| 809 | 39.94 | wind | 3.0 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 826 | 39.96 | wind | 9.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 850 | 39.97 | humidity | 80.0 | 90 | > th | dose independent | rect. | 12 | 21 |
| 871 | 39.99 | humidity | 80.0 | 90 | < th | dose independent | sin | 19 | NA |
| 873 | 39.99 | radiation | 1.0 | 90 | < th | dose independent | rect. | 5 | 23 |
| 874 | 39.99 | wind | 9.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 877 | 39.99 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 12 | 9 |
| 897 | 40.01 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 920 | 40.03 | wind | 9.0 | 720 | > th | dose dependent | rect. | 14 | 4 |
| 946 | 40.04 | wind | 9.0 | 720 | > th | dose dependent | rect. | 14 | 20 |
| 947 | 40.05 | wind | 9.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 973 | 40.06 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 19 | 1 |
| 981 | 40.06 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 983 | 40.06 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 22 | 1 |