Os04g0603400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0603400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.68 | 0.338 | 11.3 | -0.412 | 2.04 | 0.534 | 1.15 | -2.83 | -0.115 | 5.08 | 20.31 | 1196 | -- | -- |
| 58.51 | 0.356 | 11.2 | 0.321 | 2.09 | 0.46 | 0.995 | -- | 0.0825 | 5.08 | 17.17 | 3273 | -- | -- |
| 54.26 | 0.343 | 11.4 | -0.507 | 2.11 | 0.537 | -- | -3.05 | -0.144 | 4.99 | 21.4 | 1737 | -- | -- |
| 59.94 | 0.361 | 11.3 | 0.255 | 2.07 | 0.525 | -- | -- | 0.0496 | 4.99 | 14.9 | 6917 | -- | -- |
| 239.29 | 0.724 | 11.2 | 0.59 | -- | -1.3 | -- | -1.59 | 0.365 | -- | 22.68 | 2705 | -- | -- |
| 62.3 | 0.37 | 11.2 | 0.512 | 2.06 | -- | 0.976 | -- | 0.189 | 4.98 | -- | -- | -- | -- |
| 64.72 | 0.377 | 11.2 | 0.51 | 2.07 | -- | -- | -- | 0.184 | 4.95 | -- | -- | -- | -- |
| 241.2 | 0.726 | 11.2 | 0.834 | -- | -1.4 | -- | -- | 0.438 | -- | 22.68 | 2705 | -- | -- |
| 60.84 | 0.363 | 11.3 | -- | 2.05 | 0.669 | -- | -- | -0.0203 | 4.94 | 10.67 | 8518 | -- | -- |
| 290.28 | 0.796 | 11.2 | 0.585 | -- | -- | -- | -- | 0.238 | -- | -- | -- | -- | -- |
| 71.56 | 0.396 | 11.2 | -- | 2.08 | -- | -- | -- | 0.128 | 4.94 | -- | -- | -- | -- |
| 258.95 | 0.752 | 11.2 | -- | -- | -1.25 | -- | -- | 0.327 | -- | 22.68 | 2705 | -- | -- |
| 299.32 | 0.808 | 11.3 | -- | -- | -- | -- | -- | 0.173 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.85 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 4 | 50.21 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 10 |
| 5 | 50.23 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 21 | 6 |
| 6 | 50.30 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 9 | 50.50 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 20 | 12 |
| 16 | 50.61 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 18 | 50.72 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 20 | 8 |
| 34 | 50.87 | temperature | 30.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 38 | 50.88 | radiation | 40.0 | 270 | < th | dose independent | rect. | 10 | 19 |
| 45 | 50.92 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 51 | 51.00 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 10 | 10 |
| 70 | 51.19 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 72 | 51.21 | wind | 1.0 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 74 | 51.21 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 89 | 51.34 | wind | 3.0 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 93 | 51.36 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 13 |
| 94 | 51.36 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 13 |
| 98 | 51.39 | wind | 3.0 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 99 | 51.39 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 13 |
| 119 | 51.54 | wind | 1.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 131 | 51.61 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 143 | 51.66 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 24 | 5 |
| 165 | 51.80 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 184 | 51.91 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 186 | 51.92 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 13 | NA |
| 237 | 52.01 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 251 | 52.03 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 266 | 52.04 | wind | 9.0 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 273 | 52.06 | radiation | 30.0 | 90 | < th | dose dependent | sin | 7 | NA |
| 275 | 52.06 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 5 |
| 299 | 52.10 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 13 |
| 300 | 52.10 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 7 | NA |
| 329 | 52.14 | radiation | 40.0 | 270 | < th | dose independent | rect. | 24 | 14 |
| 336 | 52.15 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 350 | 52.16 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 351 | 52.16 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 365 | 52.18 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 399 | 52.23 | temperature | 20.0 | 1440 | > th | dose dependent | no | NA | NA |
| 416 | 52.25 | radiation | 10.0 | 90 | < th | dose independent | sin | 6 | NA |
| 431 | 52.26 | wind | 3.0 | 10 | < th | dose dependent | rect. | 3 | 4 |
| 446 | 52.27 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 462 | 52.28 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 485 | 52.31 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 11 |
| 487 | 52.31 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 13 |
| 488 | 52.31 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 13 |
| 525 | 52.34 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 10 |
| 568 | 52.37 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 12 | 19 |
| 575 | 52.38 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 628 | 52.43 | wind | 5.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 629 | 52.43 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 671 | 52.46 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 679 | 52.47 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 7 |
| 680 | 52.47 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 706 | 52.50 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 11 |
| 707 | 52.50 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 762 | 52.55 | wind | 5.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 770 | 52.56 | wind | 3.0 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 782 | 52.57 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 812 | 52.59 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 21 |
| 827 | 52.62 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 849 | 52.63 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 858 | 52.64 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 11 |
| 882 | 52.66 | radiation | 1.0 | 90 | > th | dose dependent | sin | 9 | NA |
| 894 | 52.67 | radiation | 30.0 | 10 | < th | dose dependent | sin | 6 | NA |
| 907 | 52.68 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 928 | 52.70 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 11 |
| 929 | 52.70 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 10 | 19 |
| 944 | 52.71 | wind | 3.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 990 | 52.73 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 12 | NA |