BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0599300 Os04g0599300|AK119509
         (464 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0599300  Basic helix-loop-helix dimerisation region bHL...   938   0.0  
Os01g0293100  Basic helix-loop-helix dimerisation region bHL...   172   5e-43

>Os04g0599300 Basic helix-loop-helix dimerisation region bHLH domain containing
           protein
          Length = 464

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/464 (97%), Positives = 453/464 (97%)

Query: 1   MIVGAGYFEDSHDQSLMAGSLIHDSNQAPASSENTSIDLQKFKVHPYSTEALSNTANLAE 60
           MIVGAGYFEDSHDQSLMAGSLIHDSNQAPASSENTSIDLQKFKVHPYSTEALSNTANLAE
Sbjct: 1   MIVGAGYFEDSHDQSLMAGSLIHDSNQAPASSENTSIDLQKFKVHPYSTEALSNTANLAE 60

Query: 61  AARAINHLQHQLEIDLEQEVPPVETANWDPAICTIPDHIINHQFSEDPQNILVEQQIQQY 120
           AARAINHLQHQLEIDLEQEVPPVETANWDPAICTIPDHIINHQFSEDPQNILVEQQIQQY
Sbjct: 61  AARAINHLQHQLEIDLEQEVPPVETANWDPAICTIPDHIINHQFSEDPQNILVEQQIQQY 120

Query: 121 DSALYPNGVYTPAPDLLNLMQCTMAPAFPATTSVFGDTTLNGTNYLDLNGELTGVAAVPD 180
           DSALYPNGVYTPAPDLLNLMQCTMAPAFPATTSVFGDTTLNGTNYLDLNGELTGVAAVPD
Sbjct: 121 DSALYPNGVYTPAPDLLNLMQCTMAPAFPATTSVFGDTTLNGTNYLDLNGELTGVAAVPD 180

Query: 181 SGSGLMFASDSALQLGYHGTQSHLIKDICHSLPQNYGLFPSEDERDVIIGVGSGDLFQEI 240
           SGSGLMFASDSALQLGYHGTQSHLIKDICHSLPQNYGLFPSEDERDVIIGVGSGDLFQEI
Sbjct: 181 SGSGLMFASDSALQLGYHGTQSHLIKDICHSLPQNYGLFPSEDERDVIIGVGSGDLFQEI 240

Query: 241 DDRQFDSVLECRRXXXXXXXXXXXANFATERERREQLNVKFRTLRMLFPNPTKNDRASIV 300
           DDRQFDSVLECRR           ANFATERERREQLNVKFRTLRMLFPNPTKNDRASIV
Sbjct: 241 DDRQFDSVLECRRGKGEFGKGKGKANFATERERREQLNVKFRTLRMLFPNPTKNDRASIV 300

Query: 301 GDAIEYIDELNRTVKELKILVEQKRHGNNRRKVLKLDQEAAADGESSSMRPVRDDQDNQL 360
           GDAIEYIDELNRTVKELKILVEQKRHGNNRRKVLKLDQEAAADGESSSMRPVRDDQDNQL
Sbjct: 301 GDAIEYIDELNRTVKELKILVEQKRHGNNRRKVLKLDQEAAADGESSSMRPVRDDQDNQL 360

Query: 361 HGAIRSSWVQRRSKECHVDVRIVDDEVNIKLTEKKKANSLLHAAKVLDEFQLELIHVVGG 420
           HGAIRSSWVQRRSKECHVDVRIVDDEVNIKLTEKKKANSLLHAAKVLDEFQLELIHVVGG
Sbjct: 361 HGAIRSSWVQRRSKECHVDVRIVDDEVNIKLTEKKKANSLLHAAKVLDEFQLELIHVVGG 420

Query: 421 IIGDHHIFMFNTKVSEGSAVYACAVAKKLLQAVDVQHQALDIFN 464
           IIGDHHIFMFNTKVSEGSAVYACAVAKKLLQAVDVQHQALDIFN
Sbjct: 421 IIGDHHIFMFNTKVSEGSAVYACAVAKKLLQAVDVQHQALDIFN 464



>Os01g0293100 Basic helix-loop-helix dimerisation region bHLH domain containing
           protein
          Length = 379

 Score =  172 bits (436), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 91/199 (45%), Positives = 131/199 (65%), Gaps = 17/199 (8%)

Query: 270 ERERREQLNVKFRTLRMLFPNPTKNDRASIVGDAIEYIDELNRTVKELKILVEQKRHGNN 329
           E++RR +L  K+  L +L PN TK DRA+++ DAIEYI EL RTV+EL +LVE+KR    
Sbjct: 182 EKQRRLRLTEKYNALMLLIPNRTKEDRATVISDAIEYIQELGRTVEELTLLVEKKR---R 238

Query: 330 RRK-------------VLKLDQEA-AADGESSSMRPVRDDQDNQLHGAIRSSWVQRRSKE 375
           RR+             V  +DQ A +++GE  +   +           IRS+++QRRSKE
Sbjct: 239 RREMQGDVVDAATSSVVAGMDQAAESSEGEVMAAAAMGAVAPPPRQAPIRSTYIQRRSKE 298

Query: 376 CHVDVRIVDDEVNIKLTEKKKANSLLHAAKVLDEFQLELIHVVGGIIGDHHIFMFNTKVS 435
             VDVRIV+D+VNIKLT++++   L  A++ LD+ +L+L+H+ GG IGD HI+MFNTK+ 
Sbjct: 299 TFVDVRIVEDDVNIKLTKRRRDGCLAAASRALDDLRLDLVHLSGGKIGDCHIYMFNTKIH 358

Query: 436 EGSAVYACAVAKKLLQAVD 454
            GS V+A AVA +L++ VD
Sbjct: 359 SGSPVFASAVASRLIEVVD 377



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,599,726
Number of extensions: 654272
Number of successful extensions: 1669
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1671
Number of HSP's successfully gapped: 2
Length of query: 464
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 360
Effective length of database: 11,605,545
Effective search space: 4177996200
Effective search space used: 4177996200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)