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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0599300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0205) R2 : 0.00657
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.075 (0.0432) R2dN8 : 0.00848 R2N8 : 0.00657
σ : 0.386
deviance : 68.5
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
64.96 0.379 3.19 0.199 0.143 -0.315 -0.103 3.29 -0.0537 10.7 999.9 60 -- --
65.24 0.379 3.23 -0.0146 0.146 0.256 -0.0923 -- -0.054 10.7 999.9 60 -- --
65 0.376 3.19 0.195 0.143 -0.314 -- 3.28 -0.0537 10.8 999.9 63 -- --
65.12 0.376 3.23 -0.016 0.149 0.266 -- -- -0.052 10.8 999.7 63 -- --
66.27 0.379 3.19 0.223 -- -0.406 -- 3.83 -0.0551 -- 999.9 60 -- --
67.04 0.384 3.23 0.0307 0.151 -- -0.0766 -- -0.071 10.9 -- -- -- --
67.07 0.384 3.23 0.0277 0.151 -- -- -- -0.0712 10.9 -- -- -- --
66.45 0.38 3.23 -0.0242 -- 0.279 -- -- -0.0542 -- 999.7 71 -- --
65.13 0.376 3.23 -- 0.147 0.265 -- -- -0.0531 10.8 999.8 67 -- --
68.48 0.387 3.24 0.0244 -- -- -- -- -0.0723 -- -- -- -- --
67.09 0.383 3.23 -- 0.151 -- -- -- -0.0743 10.9 -- -- -- --
66.46 0.38 3.23 -- -- 0.275 -- -- -0.0518 -- 999.7 76 -- --
68.5 0.386 3.24 -- -- -- -- -- -0.075 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.40 precipitation 0.1 4320 > th dose dependent rect. 20 1
2 61.34 atmosphere 995.0 4320 > th dose independent rect. 12 2
9 61.81 precipitation 0.1 4320 < th dose independent rect. 20 1
10 61.81 precipitation 0.1 4320 < th dose dependent rect. 20 1
12 61.85 precipitation 0.1 4320 > th dose independent rect. 20 1
13 61.85 radiation 1.0 4320 < th dose dependent rect. 23 1
14 61.88 atmosphere 995.0 4320 > th dose independent rect. 4 9
15 61.88 atmosphere 995.0 4320 < th dose dependent rect. 14 1
34 61.92 atmosphere 995.0 4320 < th dose independent rect. 14 1
58 62.07 atmosphere 995.0 4320 > th dose independent rect. 9 4
127 62.44 atmosphere 995.0 4320 > th dose independent rect. 24 13
128 62.45 atmosphere 995.0 4320 > th dose independent rect. 14 2
132 62.48 atmosphere 995.0 4320 > th dose independent rect. 7 6
152 62.60 atmosphere 995.0 4320 > th dose independent rect. 12 9
227 62.91 atmosphere 995.0 4320 < th dose independent rect. 2 13
231 62.92 atmosphere 995.0 4320 < th dose independent rect. 4 11
235 62.92 atmosphere 995.0 4320 > th dose independent rect. 19 18
258 63.28 wind 7.0 4320 > th dose independent rect. 21 1
262 63.30 radiation 10.0 10 > th dose independent rect. 6 1
288 63.30 radiation 10.0 10 > th dose dependent rect. 6 1
322 63.41 wind 5.0 4320 > th dose dependent rect. 21 1
334 63.46 humidity 80.0 14400 < th dose dependent rect. 3 6
339 63.55 radiation 1.0 4320 < th dose dependent rect. 23 3
343 63.62 humidity 80.0 14400 < th dose dependent rect. 21 13
352 63.69 wind 7.0 4320 > th dose independent rect. 6 1
353 63.69 humidity 80.0 14400 < th dose dependent rect. 7 2
357 63.71 wind 7.0 4320 > th dose dependent rect. 6 1
358 63.72 wind 7.0 4320 < th dose independent rect. 21 1
364 63.80 humidity 90.0 720 > th dose independent rect. 3 2
367 63.86 radiation 1.0 4320 < th dose dependent rect. 19 7
369 63.87 humidity 90.0 720 < th dose independent rect. 3 1
377 63.89 atmosphere 995.0 4320 > th dose independent sin 7 NA
395 63.93 wind 5.0 14400 < th dose independent rect. 11 4
403 63.96 wind 5.0 14400 < th dose independent rect. 11 6
405 63.96 atmosphere 995.0 4320 < th dose dependent sin 5 NA
411 64.03 wind 5.0 14400 > th dose independent rect. 11 4
412 64.03 wind 5.0 14400 > th dose independent rect. 11 6
413 64.03 wind 1.0 14400 < th dose dependent rect. 6 1
424 64.06 wind 5.0 4320 > th dose dependent rect. 20 6
429 64.09 humidity 70.0 14400 > th dose independent rect. 7 3
440 64.09 atmosphere 1000.0 90 > th dose independent rect. 3 12
455 64.11 atmosphere 1000.0 10 > th dose independent rect. 11 23
457 64.12 humidity 70.0 14400 > th dose independent rect. 8 1
460 64.13 humidity 70.0 14400 < th dose independent rect. 7 3
462 64.13 atmosphere 1000.0 10 > th dose independent rect. 2 14
478 64.15 atmosphere 1000.0 90 > th dose independent rect. 9 23
482 64.16 atmosphere 995.0 4320 < th dose independent sin 6 NA
510 64.19 atmosphere 1000.0 90 < th dose independent rect. 9 4
517 64.21 wind 5.0 14400 > th dose independent rect. 16 1
520 64.21 humidity 60.0 14400 > th dose dependent rect. 8 1
524 64.22 atmosphere 1000.0 10 < th dose independent rect. 10 2
543 64.23 atmosphere 1000.0 30 > th dose independent rect. 23 23
545 64.24 atmosphere 1000.0 10 < th dose independent rect. 6 7
551 64.25 atmosphere 1000.0 90 > th dose independent rect. 17 23
552 64.26 humidity 60.0 14400 < th dose independent rect. 11 1
557 64.26 atmosphere 1000.0 10 < th dose independent rect. 24 13
558 64.26 atmosphere 1000.0 10 > th dose independent rect. 11 21
562 64.27 atmosphere 1000.0 90 < th dose independent rect. 11 2
587 64.30 humidity 80.0 14400 > th dose independent rect. 22 16
589 64.31 humidity 90.0 14400 > th dose independent rect. 7 1
606 64.33 wind 5.0 14400 < th dose independent rect. 16 1
608 64.33 humidity 80.0 14400 < th dose independent rect. 7 7
619 64.34 temperature 25.0 720 < th dose independent rect. 1 11
643 64.37 wind 5.0 4320 > th dose independent rect. 20 5
647 64.37 humidity 80.0 14400 > th dose independent rect. 7 7
655 64.37 radiation 10.0 30 > th dose independent rect. 17 15
657 64.37 atmosphere 1000.0 10 > th dose independent rect. 18 22
671 64.38 wind 3.0 14400 > th dose dependent rect. 11 4
672 64.38 humidity 80.0 14400 > th dose dependent rect. 7 8
695 64.39 humidity 80.0 14400 < th dose dependent sin 8 NA
696 64.39 humidity 60.0 14400 < th dose dependent rect. 12 1
702 64.40 atmosphere 1005.0 43200 < th dose independent rect. 2 1
704 64.40 humidity 80.0 14400 > th dose independent rect. 12 2
734 64.41 humidity 60.0 30 < th dose dependent rect. 17 1
747 64.42 wind 3.0 14400 > th dose dependent rect. 10 7
750 64.43 wind 1.0 14400 > th dose independent rect. 4 3
761 64.44 atmosphere 1005.0 43200 > th dose independent rect. 2 1
817 64.47 wind 1.0 14400 < th dose independent rect. 4 3
819 64.47 wind 5.0 4320 < th dose independent rect. 20 5
837 64.48 wind 1.0 14400 < th dose independent rect. 6 1
858 64.48 wind 1.0 14400 < th dose dependent rect. 4 3
866 64.49 temperature 25.0 720 > th dose independent rect. 24 10
873 64.49 wind 5.0 14400 < th dose independent rect. 10 15
891 64.50 humidity 90.0 14400 < th dose independent rect. 7 2
953 64.52 atmosphere 995.0 720 > th dose independent rect. 23 16
985 64.54 humidity 80.0 14400 < th dose independent rect. 12 1