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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0293100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0169) R2 : 0.0203
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.11 (0.0356) R2dN8 : 0.0263 R2N8 : 0.0203
σ : 0.318
deviance : 46.52
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.15 0.309 2.88 -0.0161 0.113 0.376 -0.0644 -1.17 0.118 9.54 1015 655 -- --
43.16 0.306 2.89 -0.00635 0.117 0.83 -0.09 -- 0.116 9.55 1016 627 -- --
43.16 0.306 2.88 -0.0181 0.113 0.378 -- -1.15 0.118 9.69 1015 655 -- --
43.16 0.306 2.89 -0.00565 0.113 0.784 -- -- 0.119 9.69 1016 628 -- --
43.9 0.309 2.89 -0.0178 -- 0.331 -- -1.16 0.119 -- 1015 667 -- --
45.58 0.317 2.89 -0.0639 0.115 -- -0.0874 -- 0.102 9.56 -- -- -- --
45.61 0.316 2.89 -0.0669 0.115 -- -- -- 0.102 9.75 -- -- -- --
43.92 0.309 2.89 -0.00571 -- 0.732 -- -- 0.119 -- 1016 629 -- --
43.16 0.306 2.89 -- 0.114 0.783 -- -- 0.119 9.7 1016 628 -- --
46.39 0.318 2.89 -0.068 -- -- -- -- 0.102 -- -- -- -- --
45.73 0.316 2.89 -- 0.115 -- -- -- 0.109 9.79 -- -- -- --
43.92 0.309 2.89 -- -- 0.733 -- -- 0.12 -- 1016 628 -- --
46.52 0.318 2.89 -- -- -- -- -- 0.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.93 radiation 1 10 > th dose dependent rect. 18 1
12 36.21 humidity 60 10 < th dose dependent rect. 18 16
14 36.72 humidity 60 10 < th dose dependent rect. 18 1
29 40.12 radiation 1 10 > th dose independent rect. 18 1
40 40.52 humidity 60 10 < th dose independent rect. 18 16
41 40.63 temperature 30 10 > th dose dependent rect. 18 1
57 40.82 humidity 60 10 < th dose independent rect. 18 1
89 42.84 wind 3 10 > th dose dependent rect. 18 1
92 42.90 atmosphere 1015 720 < th dose independent rect. 14 16
93 42.90 atmosphere 1015 720 < th dose independent rect. 7 23
94 42.93 atmosphere 1015 720 < th dose independent rect. 18 8
107 43.02 atmosphere 1015 720 < th dose independent rect. 9 17
108 43.03 atmosphere 1015 720 < th dose independent rect. 20 16
109 43.03 atmosphere 1015 720 < th dose independent rect. 3 23
110 43.06 atmosphere 1015 720 < th dose independent rect. 14 23
111 43.10 atmosphere 1015 720 < th dose independent rect. 20 23
114 43.13 atmosphere 1015 720 < th dose independent rect. 11 15
117 43.14 atmosphere 1015 720 < th dose independent rect. 18 17
118 43.15 atmosphere 1015 720 > th dose independent sin 14 NA
120 43.15 atmosphere 1015 720 > th dose independent rect. 21 5
121 43.15 atmosphere 1015 720 > th dose independent rect. 1 23
124 43.15 atmosphere 1015 720 > th dose dependent sin 17 NA
125 43.15 atmosphere 1015 720 > th dose dependent rect. 1 23
126 43.16 atmosphere 1015 720 > th dose independent rect. 20 7
140 43.16 atmosphere 1015 720 > th dose independent rect. 2 21
146 43.16 atmosphere 1015 720 > th dose dependent rect. 21 4
147 43.16 atmosphere 1015 720 > th dose dependent rect. 3 18
148 43.16 atmosphere 1015 720 > th dose dependent rect. 2 20
149 43.16 atmosphere 1015 720 > th dose dependent rect. 3 22
151 43.17 atmosphere 1015 720 < th dose independent sin 15 NA
154 43.17 atmosphere 1015 720 < th dose independent rect. 18 23
158 43.18 atmosphere 1015 720 > th dose independent rect. 3 18
159 43.18 atmosphere 1015 720 < th dose independent rect. 5 23
160 43.18 atmosphere 1015 720 > th dose dependent sin 0 NA
180 43.19 atmosphere 1015 720 < th dose independent rect. 22 23
199 43.20 atmosphere 1015 720 > th dose independent sin 0 NA
200 43.20 atmosphere 1015 720 < th dose independent no NA NA
201 43.20 atmosphere 1015 1440 < th dose independent rect. 21 1
222 43.21 atmosphere 1015 720 > th dose independent no NA NA
224 43.21 atmosphere 1015 1440 > th dose independent rect. 21 1
390 43.25 atmosphere 1015 720 < th dose independent rect. 7 19
405 43.28 atmosphere 1015 720 < th dose independent rect. 24 23
410 43.30 atmosphere 1015 720 < th dose independent sin 0 NA
454 43.34 atmosphere 1015 720 > th dose dependent no NA NA
601 43.36 atmosphere 1015 720 < th dose independent rect. 16 23
608 43.38 humidity 60 10 < th dose independent rect. 13 22
657 43.44 atmosphere 1015 720 < th dose independent rect. 22 8
676 43.49 atmosphere 1015 720 < th dose independent rect. 20 8
774 43.60 temperature 30 10 > th dose independent rect. 18 1
802 43.62 atmosphere 1015 720 < th dose independent rect. 11 23
806 43.62 atmosphere 1005 720 > th dose dependent rect. 19 9
808 43.63 wind 7 1440 < th dose independent rect. 7 1
819 43.63 atmosphere 1005 720 > th dose dependent rect. 20 7
907 43.73 wind 3 10 > th dose independent rect. 18 1
913 43.74 humidity 60 10 < th dose independent sin 11 NA
916 43.74 temperature 15 4320 > th dose independent rect. 7 1
972 43.77 atmosphere 1005 90 > th dose dependent rect. 21 14
987 43.78 atmosphere 1005 10 > th dose dependent rect. 21 15