BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0293100 Os01g0293100|AK106850
         (379 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0293100  Basic helix-loop-helix dimerisation region bHL...   561   e-160
Os04g0599300  Basic helix-loop-helix dimerisation region bHL...   144   1e-34

>Os01g0293100 Basic helix-loop-helix dimerisation region bHLH domain containing
           protein
          Length = 379

 Score =  561 bits (1446), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 296/379 (78%), Positives = 296/379 (78%)

Query: 1   MYHPQCELLMPLESLEMDVGQSHLAAAVAAAMPGELNFHLLHSLDXXXXXXXXXXXXXXX 60
           MYHPQCELLMPLESLEMDVGQSHLAAAVAAAMPGELNFHLLHSLD               
Sbjct: 1   MYHPQCELLMPLESLEMDVGQSHLAAAVAAAMPGELNFHLLHSLDAAAAAASSTAASASS 60

Query: 61  QPTVDYFFGGXXXXXXXXXXXXXXXLAAPHHHQTVAMLRDYYGGHYPPXXXXXXXTEAYF 120
           QPTVDYFFGG               LAAPHHHQTVAMLRDYYGGHYPP       TEAYF
Sbjct: 61  QPTVDYFFGGADQQPPPPAAMQYDQLAAPHHHQTVAMLRDYYGGHYPPAAAAAAATEAYF 120

Query: 121 RGGPRTAGSSSLVFGPADDESAFMVGPFESSPTPRSGGGRKRSRATAGFHGGGPANGVEK 180
           RGGPRTAGSSSLVFGPADDESAFMVGPFESSPTPRSGGGRKRSRATAGFHGGGPANGVEK
Sbjct: 121 RGGPRTAGSSSLVFGPADDESAFMVGPFESSPTPRSGGGRKRSRATAGFHGGGPANGVEK 180

Query: 181 KEKQRRLRLTEKYNALMLLIPNRTKEDRATVISDAIEYIQELGRTVEELTLLVEKKRRRR 240
           KEKQRRLRLTEKYNALMLLIPNRTKEDRATVISDAIEYIQELGRTVEELTLLVEKKRRRR
Sbjct: 181 KEKQRRLRLTEKYNALMLLIPNRTKEDRATVISDAIEYIQELGRTVEELTLLVEKKRRRR 240

Query: 241 EMQGXXXXXXXXXXXXGMDQXXXXXXXXXXXXXXXXXXXPPPRQAPIRSTYIQRRSKETF 300
           EMQG            GMDQ                   PPPRQAPIRSTYIQRRSKETF
Sbjct: 241 EMQGDVVDAATSSVVAGMDQAAESSEGEVMAAAAMGAVAPPPRQAPIRSTYIQRRSKETF 300

Query: 301 VDVRIVEDDVNIKLTKRRRDGCXXXXXXXXXXXXXXXVHLSGGKIGDCHIYMFNTKIHSG 360
           VDVRIVEDDVNIKLTKRRRDGC               VHLSGGKIGDCHIYMFNTKIHSG
Sbjct: 301 VDVRIVEDDVNIKLTKRRRDGCLAAASRALDDLRLDLVHLSGGKIGDCHIYMFNTKIHSG 360

Query: 361 SPVFASAVASRLIEVVDEY 379
           SPVFASAVASRLIEVVDEY
Sbjct: 361 SPVFASAVASRLIEVVDEY 379



>Os04g0599300 Basic helix-loop-helix dimerisation region bHLH domain containing
           protein
          Length = 464

 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 114/200 (57%), Gaps = 19/200 (9%)

Query: 182 EKQRRLRLTEKYNALMLLIPNRTKEDRATVISDAIEYIQELGRTVEELTLLVEKKR---- 237
           E++RR +L  K+  L +L PN TK DRA+++ DAIEYI EL RTV+EL +LVE+KR    
Sbjct: 270 ERERREQLNVKFRTLRMLFPNPTKNDRASIVGDAIEYIDELNRTVKELKILVEQKRHGNN 329

Query: 238 RRREMQGXXXXXXXXXXXXGMDQXXXXXXXXXXXXXXXXXXXPPPRQAPIRSTYIQRRSK 297
           RR+ ++              +DQ                        A IRS+++QRRSK
Sbjct: 330 RRKVLK--------------LDQEAAADGESSSMRPVRDDQDNQLHGA-IRSSWVQRRSK 374

Query: 298 ETFVDVRIVEDDVNIKLTKRRRDGCXXXXXXXXXXXXXXXVHLSGGKIGDCHIYMFNTKI 357
           E  VDVRIV+D+VNIKLT++++                  +H+ GG IGD HI+MFNTK+
Sbjct: 375 ECHVDVRIVDDEVNIKLTEKKKANSLLHAAKVLDEFQLELIHVVGGIIGDHHIFMFNTKV 434

Query: 358 HSGSPVFASAVASRLIEVVD 377
             GS V+A AVA +L++ VD
Sbjct: 435 SEGSAVYACAVAKKLLQAVD 454



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,354,033
Number of extensions: 467173
Number of successful extensions: 1910
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1910
Number of HSP's successfully gapped: 3
Length of query: 379
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 276
Effective length of database: 11,657,759
Effective search space: 3217541484
Effective search space used: 3217541484
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)