BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0595200 Os04g0595200|AK068599
         (158 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0595200  Similar to UPF0195 protein CG30152                  322   1e-88
Os03g0775500  Protein of unknown function DUF59 domain conta...   207   2e-54

>Os04g0595200 Similar to UPF0195 protein CG30152
          Length = 158

 Score =  322 bits (824), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MVVGLINANPVVYEKKERRSRQAPETTDENAAEAIDQLEIFDHIRDIKDPEHPYSLEELN 60
           MVVGLINANPVVYEKKERRSRQAPETTDENAAEAIDQLEIFDHIRDIKDPEHPYSLEELN
Sbjct: 1   MVVGLINANPVVYEKKERRSRQAPETTDENAAEAIDQLEIFDHIRDIKDPEHPYSLEELN 60

Query: 61  VVTEDSVEINDELSHVRVTFTPTVERCSMATVIGLCLRVKLMRSLPPRYKVDIRVAPGSH 120
           VVTEDSVEINDELSHVRVTFTPTVERCSMATVIGLCLRVKLMRSLPPRYKVDIRVAPGSH
Sbjct: 61  VVTEDSVEINDELSHVRVTFTPTVERCSMATVIGLCLRVKLMRSLPPRYKVDIRVAPGSH 120

Query: 121 ATETAVNKQLNDKERVAAALENPNLLDIVEECLSPTFA 158
           ATETAVNKQLNDKERVAAALENPNLLDIVEECLSPTFA
Sbjct: 121 ATETAVNKQLNDKERVAAALENPNLLDIVEECLSPTFA 158



>Os03g0775500 Protein of unknown function DUF59 domain containing protein
          Length = 154

 Score =  207 bits (528), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 97/153 (63%), Positives = 127/153 (83%), Gaps = 7/153 (4%)

Query: 1   MVVGLINANPVVYEKKERRSRQAPETTDENAAEAIDQLEIFDHIRDIKDPEHPYSLEELN 60
           M VG+INANPVV+E+ ER +   P       A+AID L++FD +RDIKDPEHPYSLE+L+
Sbjct: 1   MTVGMINANPVVHERPERAAHPHP-------ADAIDALDVFDTVRDIKDPEHPYSLEQLS 53

Query: 61  VVTEDSVEINDELSHVRVTFTPTVERCSMATVIGLCLRVKLMRSLPPRYKVDIRVAPGSH 120
           V++E+SV ++++L  +++TFTPTV+ CSMATVIGLCLR+KLM++ PP +K+DI+VAPGS 
Sbjct: 54  VLSEESVSVDEKLGRIQITFTPTVQHCSMATVIGLCLRLKLMQNFPPHFKIDIKVAPGSL 113

Query: 121 ATETAVNKQLNDKERVAAALENPNLLDIVEECL 153
           A E +VNKQLNDKERVAAALENPNL  +V+ECL
Sbjct: 114 ANEESVNKQLNDKERVAAALENPNLRQLVDECL 146



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,337,159
Number of extensions: 194159
Number of successful extensions: 561
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 560
Number of HSP's successfully gapped: 2
Length of query: 158
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 65
Effective length of database: 12,179,899
Effective search space: 791693435
Effective search space used: 791693435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)