Os04g0595200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to UPF0195 protein CG30152.
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Os04g0595200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to UPF0195 protein CG30152.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.06 | 0.294 | 9.51 | 0.417 | 0.261 | -0.566 | -0.317 | 1.08 | 0.0746 | 9.48 | 10.01 | 1440 | -- | -- |
| 41.43 | 0.3 | 9.52 | 0.387 | 0.24 | -0.603 | -0.376 | -- | 0.102 | 8.91 | 10.01 | 1406 | -- | -- |
| 39.37 | 0.292 | 9.51 | 0.412 | 0.258 | -0.538 | -- | 1.16 | 0.0755 | 9.83 | 10.01 | 1437 | -- | -- |
| 41.34 | 0.299 | 9.52 | 0.257 | 0.244 | -0.587 | -- | -- | 0.0623 | 9.57 | 10.01 | 1397 | -- | -- |
| 41.11 | 0.299 | 9.52 | 0.419 | -- | -0.61 | -- | 1.07 | 0.0793 | -- | 20.04 | 1217 | -- | -- |
| 49.27 | 0.329 | 9.57 | 0.0721 | 0.269 | -- | -0.216 | -- | -0.155 | 9.79 | -- | -- | -- | -- |
| 49.4 | 0.329 | 9.58 | 0.0651 | 0.269 | -- | -- | -- | -0.155 | 10.2 | -- | -- | -- | -- |
| 42.4 | 0.303 | 9.52 | 0.188 | -- | -0.598 | -- | -- | 0.0437 | -- | 13.05 | 1220 | -- | -- |
| 41.74 | 0.301 | 9.53 | -- | 0.233 | -0.497 | -- | -- | 0.0384 | 9.87 | 45.97 | 1369 | -- | -- |
| 53.8 | 0.343 | 9.58 | 0.0612 | -- | -- | -- | -- | -0.155 | -- | -- | -- | -- | -- |
| 49.51 | 0.329 | 9.58 | -- | 0.269 | -- | -- | -- | -0.162 | 10.2 | -- | -- | -- | -- |
| 42.7 | 0.304 | 9.54 | -- | -- | -0.583 | -- | -- | -0.0453 | -- | 45.97 | 1135 | -- | -- |
| 53.9 | 0.343 | 9.58 | -- | -- | -- | -- | -- | -0.162 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.74 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 2 | 36.74 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 13 |
| 3 | 36.75 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 4 | 36.75 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 38 | 37.56 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 42 | 37.76 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 45 | 37.88 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 2 |
| 62 | 37.92 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 63 | 37.92 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 72 | 38.05 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 76 | 38.21 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 11 |
| 88 | 38.25 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 15 |
| 96 | 38.33 | radiation | 10 | 1440 | < th | dose dependent | sin | 21 | NA |
| 128 | 38.51 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 175 | 38.68 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 14 |
| 180 | 38.72 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 212 | 38.82 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 217 | 38.84 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 218 | 38.85 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 283 | 38.96 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 286 | 38.98 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 3 |
| 313 | 39.01 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 316 | 39.04 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 342 | 39.07 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 413 | 39.09 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 417 | 39.10 | radiation | 10 | 1440 | > th | dose independent | sin | 3 | NA |
| 447 | 39.12 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 516 | 39.21 | radiation | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 519 | 39.21 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 523 | 39.21 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 526 | 39.21 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 12 |
| 534 | 39.22 | radiation | 30 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 539 | 39.23 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 573 | 39.27 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 673 | 39.33 | radiation | 1 | 1440 | > th | dose dependent | rect. | 7 | 11 |
| 680 | 39.34 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 685 | 39.35 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 7 |
| 710 | 39.35 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 711 | 39.35 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 734 | 39.37 | radiation | 1 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 826 | 39.45 | radiation | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 830 | 39.45 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 831 | 39.45 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 834 | 39.45 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 893 | 39.46 | temperature | 30 | 720 | < th | dose independent | sin | 12 | NA |
| 903 | 39.46 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 20 |
| 912 | 39.47 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 8 |