BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0593400 Os04g0593400|J065098B02
(161 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0593400 Bet v I allergen family protein 305 1e-83
AK110687 303 5e-83
Os04g0593500 Bet v I allergen family protein 146 6e-36
>Os04g0593400 Bet v I allergen family protein
Length = 161
Score = 305 bits (780), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 151/161 (93%), Positives = 151/161 (93%)
Query: 1 MRGSQSHELETDVPASELWKIYGTLRXXXXXXXXXXHILAKVELVTGDGGVGTIVRLTFP 60
MRGSQSHELETDVPASELWKIYGTLR HILAKVELVTGDGGVGTIVRLTFP
Sbjct: 1 MRGSQSHELETDVPASELWKIYGTLRAAELLPELLPHILAKVELVTGDGGVGTIVRLTFP 60
Query: 61 PGIPGLQSYKEKFIKVDNKNYVKEAEAVEGDILKLGFLSYMIRFEIIRKGANTSVIRSTI 120
PGIPGLQSYKEKFIKVDNKNYVKEAEAVEGDILKLGFLSYMIRFEIIRKGANTSVIRSTI
Sbjct: 61 PGIPGLQSYKEKFIKVDNKNYVKEAEAVEGDILKLGFLSYMIRFEIIRKGANTSVIRSTI 120
Query: 121 EYEIGDEHPELQAMVSTASLAATAEKFAEYIKKQKVAQANT 161
EYEIGDEHPELQAMVSTASLAATAEKFAEYIKKQKVAQANT
Sbjct: 121 EYEIGDEHPELQAMVSTASLAATAEKFAEYIKKQKVAQANT 161
>AK110687
Length = 161
Score = 303 bits (775), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 150/161 (93%), Positives = 150/161 (93%)
Query: 1 MRGSQSHELETDVPASELWKIYGTLRXXXXXXXXXXHILAKVELVTGDGGVGTIVRLTFP 60
MRGSQSHELETDVPASELWKIYGTLR HILAKVELVTGDGGVGTIVRLTFP
Sbjct: 1 MRGSQSHELETDVPASELWKIYGTLRAAELLPELLPHILAKVELVTGDGGVGTIVRLTFP 60
Query: 61 PGIPGLQSYKEKFIKVDNKNYVKEAEAVEGDILKLGFLSYMIRFEIIRKGANTSVIRSTI 120
PGIPGLQSYKEKFIKVDNKNYVKEAEAVEGDILKLGFLSYMIRFEIIRKGANTSVIRSTI
Sbjct: 61 PGIPGLQSYKEKFIKVDNKNYVKEAEAVEGDILKLGFLSYMIRFEIIRKGANTSVIRSTI 120
Query: 121 EYEIGDEHPELQAMVSTASLAATAEKFAEYIKKQKVAQANT 161
EYEIGDEHPELQAMVSTASLAATAEKFAEYIK QKVAQANT
Sbjct: 121 EYEIGDEHPELQAMVSTASLAATAEKFAEYIKTQKVAQANT 161
>Os04g0593500 Bet v I allergen family protein
Length = 171
Score = 146 bits (369), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 102/155 (65%), Gaps = 2/155 (1%)
Query: 1 MRGSQSHELETDVPASELWKIYGTLRXXXXXXXXXXHILAKVELVTGDGGVGTIVRLTFP 60
M+GS HELET +PA+E+W++YG + +KVELV GDGGVG+++ + F
Sbjct: 1 MKGSVCHELETGLPAAEVWEVYGGFLVAQLLPQLVPEVFSKVELVEGDGGVGSVLHVVFA 60
Query: 61 PGIPGLQSYKEKFIKVDNKNYVKEAEAVEGDILKLGFLSYMIRFEIIRKGANTSVIRSTI 120
PG + KEKFIK+DN+NY+KEAE +EG L GF Y++R EII K N+SV+RSTI
Sbjct: 61 PGAHTGEFMKEKFIKIDNENYIKEAEVIEGGFLDQGFKKYVVRIEIIGKTENSSVLRSTI 120
Query: 121 EYEIGDEHPELQAMVSTASLAATAEKFAEYIKKQK 155
++E D + VST LAATAE +Y+++Q+
Sbjct: 121 KFEAEDASK--ASSVSTGGLAATAEAVTKYMREQR 153
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.133 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,555,865
Number of extensions: 150477
Number of successful extensions: 253
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 3
Length of query: 161
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 68
Effective length of database: 12,179,899
Effective search space: 828233132
Effective search space used: 828233132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 152 (63.2 bits)