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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0593400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Bet v I allergen family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.7 (0.0646) R2 : 0.755
β1 : 3.69 (0.246) R2dD : 0.144 R2D : 0.116
β2 : 5 (0.163) R2dC : 0.507 R2C : 0.51
β3 : 2.31 (0.22) R2dE : 0.0823 R2E : 0.0461
β4 : 5.62 (0.732) R2dD*C : 0.0292 R2D*C : 0.0413
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.44 (0.149) R2dN8 : 0.00643 R2N8 : 0.0263
σ : 1.18
deviance : 637.82
__
_____
C
peak time of C : 7.01
E
wheather : radiation
threshold : 22.24
memory length : 4248
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.92
open length of G : 1.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
628.42 1.18 6.69 3.56 5 1.88 5.4 -2.19 -0.394 7.02 20.03 4260 7.02 1
637.82 1.18 6.7 3.69 5 2.31 5.62 -- -0.44 7.01 22.24 4248 6.92 1.1
703.21 1.24 6.7 3.66 5.01 1.84 -- -2.19 -0.412 7.03 19.07 4259 7.01 1.02
711.91 1.24 6.71 3.98 5.01 2.63 -- -- -0.379 7.05 22.98 4248 6.88 1.12
1982.95 2.07 6.84 3.75 -- 2.08 -- -2.2 -0.443 -- 18.22 4577 7.03 0.934
806.03 1.33 6.88 2.81 5.02 -- 5.56 -- -1.1 6.94 -- -- -- --
885.93 1.39 6.88 2.92 5.04 -- -- -- -1.11 6.98 -- -- -- --
1972.84 2.07 6.84 3.8 -- 3.14 -- -- -0.389 -- 18.72 4574 7.03 0.917
1004.7 1.48 6.86 -- 4.81 2.33 -- -- -0.76 6.91 20.01 3073 7.45 1.58
2219.73 2.2 6.99 3.02 -- -- -- -- -1.02 -- -- -- -- --
1110.22 1.56 6.96 -- 5.07 -- -- -- -1.44 6.94 -- -- -- --
2287.86 2.23 6.89 -- -- 2.69 -- -- -0.719 -- 19.81 3084 7.52 1.5
2460.35 2.32 7.07 -- -- -- -- -- -1.35 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 611.26 wind 9 43200 > th dose independent rect. 10 2
2 611.37 wind 3 43200 > th dose dependent rect. 23 16
3 611.71 wind 7 43200 > th dose dependent rect. 4 10
4 611.94 wind 9 43200 < th dose independent rect. 20 18
9 612.31 wind 7 43200 > th dose dependent rect. 9 4
10 612.38 wind 9 43200 > th dose independent rect. 9 4
19 613.09 wind 7 43200 > th dose dependent rect. 20 18
20 613.32 wind 1 43200 > th dose dependent rect. 21 8
22 613.39 wind 3 43200 > th dose dependent sin 5 NA
30 614.37 wind 9 43200 < th dose dependent rect. 21 8
32 614.81 wind 9 43200 > th dose independent rect. 20 18
35 614.88 wind 9 43200 < th dose independent rect. 9 4
36 614.90 wind 7 43200 > th dose independent sin 5 NA
48 615.45 wind 7 43200 > th dose dependent rect. 10 2
52 615.66 wind 7 43200 < th dose independent sin 5 NA
83 617.31 wind 3 43200 > th dose independent rect. 21 9
95 617.56 wind 9 43200 < th dose independent rect. 10 2
106 617.94 wind 9 43200 < th dose independent rect. 4 10
135 618.55 wind 9 43200 < th dose independent rect. 1 13
146 618.82 wind 7 43200 > th dose independent rect. 23 15
155 619.05 wind 3 43200 < th dose independent rect. 21 9
158 619.13 wind 9 43200 < th dose dependent rect. 22 14
189 619.86 wind 7 43200 > th dose independent rect. 1 13
197 619.92 wind 3 43200 > th dose dependent sin 10 NA
213 620.16 wind 5 43200 < th dose independent rect. 23 17
218 620.24 wind 9 43200 > th dose dependent rect. 14 3
230 620.49 wind 3 43200 > th dose dependent rect. 11 2
237 620.61 wind 7 43200 > th dose independent rect. 4 10
270 621.29 wind 5 43200 < th dose independent rect. 2 13
281 621.47 wind 3 43200 > th dose independent rect. 22 14
285 621.48 wind 9 43200 < th dose dependent sin 7 NA
386 622.92 wind 9 43200 < th dose dependent rect. 10 2
480 624.27 wind 3 43200 < th dose independent rect. 22 13
487 624.33 wind 3 43200 < th dose independent rect. 1 4
571 625.31 wind 3 43200 > th dose independent sin 8 NA
607 625.70 wind 3 43200 > th dose dependent rect. 6 1
810 628.06 wind 9 43200 < th dose independent rect. 14 23
839 628.44 wind 3 43200 < th dose independent sin 8 NA
872 628.80 wind 9 43200 > th dose independent rect. 14 23
926 629.43 wind 7 43200 < th dose dependent rect. 1 2