BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0578700 Os04g0578700|AK072398
(524 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0578700 MscS Mechanosensitive ion channel family protein 1045 0.0
Os02g0681000 MscS Mechanosensitive ion channel family protein 542 e-154
>Os04g0578700 MscS Mechanosensitive ion channel family protein
Length = 524
Score = 1045 bits (2701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/524 (97%), Positives = 510/524 (97%)
Query: 1 MSMIAATLRRSSRVTGSQNIMEICLGPCVSSGASSRWFSSCTKHSNTSILNQIKAVDRYS 60
MSMIAATLRRSSRVTGSQNIMEICLGPCVSSGASSRWFSSCTKHSNTSILNQIKAVDRYS
Sbjct: 1 MSMIAATLRRSSRVTGSQNIMEICLGPCVSSGASSRWFSSCTKHSNTSILNQIKAVDRYS 60
Query: 61 PVNGMSMISRVPLSAHMDTNWLSTSNPRFNALPGFLGASSICRAYSSDTGIKAEVPQNTV 120
PVNGMSMISRVPLSAHMDTNWLSTSNPRFNALPGFLGASSICRAYSSDTGIKAEVPQNTV
Sbjct: 61 PVNGMSMISRVPLSAHMDTNWLSTSNPRFNALPGFLGASSICRAYSSDTGIKAEVPQNTV 120
Query: 121 SNVPSTETVALGTSDGGSSWIDIFDNARKCTLDATTDAGKKVKELTDAITPHVQQFFDAN 180
SNVPSTETVALGTSDGGSSWIDIFDNARKCTLDATTDAGKKVKELTDAITPHVQQFFDAN
Sbjct: 121 SNVPSTETVALGTSDGGSSWIDIFDNARKCTLDATTDAGKKVKELTDAITPHVQQFFDAN 180
Query: 181 PNLEKVVVPLGGTIFGTMMAWFVMPIVLRRIHKYSIQSPISALLGSSTKNDVSYETSLWS 240
PNLEKVVVPLGGTIFGTMMAWFVMPIVLRRIHKYSIQSPISALLGSSTKNDVSYETSLWS
Sbjct: 181 PNLEKVVVPLGGTIFGTMMAWFVMPIVLRRIHKYSIQSPISALLGSSTKNDVSYETSLWS 240
Query: 241 ALEDPAKYLITFMAFSEMAGFTAPSISAYLPQAWRGAIVLSFVWFLHRWKTNFITKVAAS 300
ALEDPAKYLITFMAFSEMAGFTAPSISAYLPQAWRGAIVLSFVWFLHRWKTNFITKVAAS
Sbjct: 241 ALEDPAKYLITFMAFSEMAGFTAPSISAYLPQAWRGAIVLSFVWFLHRWKTNFITKVAAS 300
Query: 301 SIDQTRLSAFDKISSLGLIALGVMALAEACGVAAQSILXXXXXXXXXXXXXXRDVLGNML 360
SIDQTRLSAFDKISSLGLIALGVMALAEACGVAAQSIL RDVLGNML
Sbjct: 301 SIDQTRLSAFDKISSLGLIALGVMALAEACGVAAQSILTVGGVGGVATAFAARDVLGNML 360
Query: 361 SGFSLQFSSPFKAGEYIKAGSIEGKVIEIGLTSTELMNPEQLPVTVPNSLFSSQVIVNRS 420
SGFSLQFSSPFKAGEYIKAGSIEGKVIEIGLTSTELMNPEQLPVTVPNSLFSSQVIVNRS
Sbjct: 361 SGFSLQFSSPFKAGEYIKAGSIEGKVIEIGLTSTELMNPEQLPVTVPNSLFSSQVIVNRS 420
Query: 421 RAKWRSNVTKIPIRIEDIEKVPAISEEIKVMLRSNPKVVLDSEAPAPYCYLSRLESSYGE 480
RAKWRSNVTKIPIRIEDIEKVPAISEEIKVMLRSNPKVVLDSEAPAPYCYLSRLESSYGE
Sbjct: 421 RAKWRSNVTKIPIRIEDIEKVPAISEEIKVMLRSNPKVVLDSEAPAPYCYLSRLESSYGE 480
Query: 481 LTIGCNLTKMTKDECLSTTQGILLEPAKIIKLHGVELGSTTQCC 524
LTIGCNLTKMTKDECLSTTQGILLEPAKIIKLHGVELGSTTQCC
Sbjct: 481 LTIGCNLTKMTKDECLSTTQGILLEPAKIIKLHGVELGSTTQCC 524
>Os02g0681000 MscS Mechanosensitive ion channel family protein
Length = 510
Score = 542 bits (1397), Expect = e-154, Method: Compositional matrix adjust.
Identities = 284/521 (54%), Positives = 358/521 (68%), Gaps = 21/521 (4%)
Query: 1 MSMIAATLRRSSRVTGSQNIMEICLGPCVSSGASSRWFSSCTKHSN---TSILNQIKAVD 57
MS A L R + SQ+++E L C G RW S CT+ ++ TS QI VD
Sbjct: 1 MSRTAIILHRFRQAAASQSLVETSLQSCPYFGVPLRWLS-CTEQTSKWETSTSYQIDDVD 59
Query: 58 RYSPVNGMSMISRVPLSAHMDTNWLSTSNPRFNALPGFLGASSICRAYSSDTGIKAEVPQ 117
+YSP++ ++ I PLS+H++ + + + GF SS R YSSD K E +
Sbjct: 60 QYSPISSVAKICTHPLSSHVNHCYHHSRSL------GFSSVSSSRRMYSSDARAKPEDYK 113
Query: 118 NTVSNVPSTETVALGTSD-GGSSWIDIFDNARKCTLDATTDAGKKVKELTDAITPHVQQF 176
N ++ V STET +G +D G++WIDI D+AR T+DAT A KK+K +TD I P +Q+
Sbjct: 114 NAMAKVSSTETSEVGATDHSGNTWIDILDSARHSTIDATAAALKKLKAMTDPIVPCIQEL 173
Query: 177 FDANPNLEKVVVPLGGTIFGTMMAWFVMPIVLRRIHKYSIQSPISALLGSSTKNDVSYET 236
+ P+L+++V+PLGGT+ GT +AWFVMPIVLR++HKY+ ++P+ L G STK +SY+T
Sbjct: 174 YATYPDLQRMVIPLGGTLMGTAVAWFVMPIVLRKLHKYTSENPLITLEGESTKKYMSYQT 233
Query: 237 SLWSALEDPAKYLITFMAFSEMAGFTAPSISAYLPQAWRGAIVLSFVWFLHRWKTNFITK 296
SLWSALEDPAK +ITFMAFS+MA PSIS YLPQAWRG V+S +WFL +WKTNFI
Sbjct: 234 SLWSALEDPAKCIITFMAFSQMAAIVVPSISVYLPQAWRGTFVVSLLWFLQKWKTNFIAN 293
Query: 297 V----AASSIDQTRLSAFDKISSLGLIALGVMALAEACGVAAQSILXXXXXXXXXXXXXX 352
+ +A +D+ RL FDK+SSL LIALG MALAEACGV QSIL
Sbjct: 294 IMTNQSAIGMDRDRLLTFDKVSSLALIALGGMALAEACGVPVQSILTVGGVGGVATAFAA 353
Query: 353 RDVLGNMLSGFSLQFSSPFKAGEYIKAGSIEGKVIEIGLTSTELMNPEQLPVTVPNSLFS 412
RDVLGN+LSG SLQFS PF G+ IKAGSIEGKVIEIGLTST L+NPE LPV VPNSLFS
Sbjct: 354 RDVLGNILSGLSLQFSKPFLVGDNIKAGSIEGKVIEIGLTSTLLINPENLPVVVPNSLFS 413
Query: 413 SQVIVNRSRAKWRSNVTKIPIRIEDIEKVPAISEEIKVMLRSNPKVVLDSEAPAPYCYLS 472
SQ+IVN+SRA WR+ V KIP+ IED+EK+P ISEEIKV LRSNP + APYCYLS
Sbjct: 414 SQIIVNKSRAVWRARVVKIPVIIEDLEKIPTISEEIKVKLRSNPNI------DAPYCYLS 467
Query: 473 RLESSYGELTIGCNLTKMTKDECLSTTQGILLEPAKIIKLH 513
RLESS+GELTIGCN+ M +DE + Q ILL+ A I+K +
Sbjct: 468 RLESSHGELTIGCNIKSMRRDEWTTVEQDILLKAASIVKQY 508
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.130 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,384,289
Number of extensions: 645035
Number of successful extensions: 1561
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1557
Number of HSP's successfully gapped: 2
Length of query: 524
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 419
Effective length of database: 11,553,331
Effective search space: 4840845689
Effective search space used: 4840845689
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)