Os02g0681000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MscS Mechanosensitive ion channel family protein.
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Os02g0681000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MscS Mechanosensitive ion channel family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.33 | 0.489 | 10.4 | -3.97 | 1.42 | 0.891 | 0.707 | -0.741 | -0.816 | 7.39 | 10 | 1441 | -- | -- |
| 109.42 | 0.487 | 10.4 | -3.95 | 1.43 | 0.925 | 0.767 | -- | -0.786 | 7.4 | 10.01 | 1442 | -- | -- |
| 109.69 | 0.488 | 10.4 | -3.96 | 1.42 | 0.886 | -- | -0.749 | -0.815 | 7.4 | 10.01 | 1440 | -- | -- |
| 110.72 | 0.49 | 10.4 | -3.91 | 1.41 | 0.9 | -- | -- | -0.805 | 7.41 | 10.04 | 1443 | -- | -- |
| 215.25 | 0.683 | 10.4 | -3.87 | -- | 0.937 | -- | -0.617 | -0.777 | -- | 10 | 1498 | -- | -- |
| 131.12 | 0.537 | 10.3 | -3.58 | 1.42 | -- | 0.704 | -- | -0.508 | 7.3 | -- | -- | -- | -- |
| 132.45 | 0.539 | 10.3 | -3.56 | 1.42 | -- | -- | -- | -0.509 | 7.32 | -- | -- | -- | -- |
| 211.2 | 0.677 | 10.4 | -3.79 | -- | 1.3 | -- | -- | -0.713 | -- | 2.11 | 1499 | -- | -- |
| 401.57 | 0.933 | 10.3 | -- | 1.42 | 1.04 | -- | -- | -0.555 | 7.31 | 19.68 | 29071 | -- | -- |
| 239.8 | 0.724 | 10.3 | -3.54 | -- | -- | -- | -- | -0.485 | -- | -- | -- | -- | -- |
| 466.55 | 1.01 | 10.2 | -- | 1.39 | -- | -- | -- | -0.113 | 7.49 | -- | -- | -- | -- |
| 420.6 | 0.955 | 10.2 | -- | -- | 1.82 | -- | -- | -0.257 | -- | 49.81 | 31834 | -- | -- |
| 569.66 | 1.11 | 10.3 | -- | -- | -- | -- | -- | -0.0931 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.42 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 7 | 105.83 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 10 | 105.85 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 18 | 106.08 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 31 | 106.28 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 35 | 106.30 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 39 | 106.36 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 52 | 106.79 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 72 | 106.96 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 116 | 107.35 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 156 | 107.46 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 179 | 107.88 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 182 | 107.91 | radiation | 10 | 1440 | > th | dose independent | sin | 22 | NA |
| 191 | 108.04 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 212 | 108.14 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 8 |
| 231 | 108.21 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 234 | 108.23 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 248 | 108.31 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 260 | 108.33 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 331 | 108.37 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 416 | 108.63 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 491 | 108.89 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 6 |
| 513 | 108.94 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 531 | 109.07 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 548 | 109.18 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 574 | 109.29 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 613 | 109.41 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 620 | 109.44 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 697 | 109.66 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 787 | 109.95 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 876 | 110.04 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 915 | 110.12 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 919 | 110.13 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 989 | 110.30 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 13 |
| 993 | 110.31 | humidity | 50 | 720 | > th | dose dependent | sin | 14 | NA |