Os04g0578700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MscS Mechanosensitive ion channel family protein.
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Os04g0578700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MscS Mechanosensitive ion channel family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.7 | 0.347 | 8.71 | 1.08 | 0.442 | 0.857 | 0.359 | -0.824 | 0.48 | 1.94 | 0.13 | 101 | -- | -- |
| 55.53 | 0.347 | 8.71 | 0.996 | 0.422 | 0.872 | -0.506 | -- | 0.445 | 1.81 | 0.1399 | 99 | -- | -- |
| 54.82 | 0.345 | 8.71 | 1.07 | 0.434 | 0.863 | -- | -0.56 | 0.476 | 1.94 | 0.12 | 99 | -- | -- |
| 56.66 | 0.351 | 8.71 | 1.06 | 0.428 | 0.864 | -- | -- | 0.475 | 1.81 | 0.1303 | 101 | -- | -- |
| 57.86 | 0.354 | 8.7 | 1.07 | -- | 1.15 | -- | -0.549 | 0.504 | -- | 0.4299 | 101 | -- | -- |
| 66.07 | 0.381 | 8.74 | 0.965 | 1.42 | -- | -0.511 | -- | 0.403 | 0.985 | -- | -- | -- | -- |
| 67.16 | 0.384 | 8.74 | 0.984 | 1.42 | -- | -- | -- | 0.406 | 1.01 | -- | -- | -- | -- |
| 58.73 | 0.357 | 8.71 | 1.09 | -- | 1.16 | -- | -- | 0.5 | -- | 0.12 | 116 | -- | -- |
| 85.8 | 0.431 | 8.71 | -- | 0.421 | 0.86 | -- | -- | 0.42 | 1.85 | 0.8302 | 99 | -- | -- |
| 192.56 | 0.648 | 8.72 | 1.04 | -- | -- | -- | -- | 0.434 | -- | -- | -- | -- | -- |
| 92.66 | 0.45 | 8.76 | -- | 1.44 | -- | -- | -- | 0.296 | 1.03 | -- | -- | -- | -- |
| 89.16 | 0.44 | 8.73 | -- | -- | 1.18 | -- | -- | 0.413 | -- | 0.43 | 113 | -- | -- |
| 220.93 | 0.694 | 8.74 | -- | -- | -- | -- | -- | 0.318 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.93 | temperature | 15 | 90 | > th | dose dependent | rect. | 4 | 14 |
| 81 | 49.14 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 116 | 49.87 | humidity | 50 | 270 | > th | dose dependent | rect. | 7 | 12 |
| 143 | 50.26 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 165 | 50.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 166 | 50.57 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 174 | 50.71 | humidity | 60 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 206 | 51.04 | humidity | 50 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 295 | 51.86 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 14 |
| 303 | 51.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 322 | 52.06 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 415 | 52.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 11 |
| 420 | 52.51 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 14 |
| 441 | 52.62 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 477 | 52.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 9 |
| 480 | 52.79 | humidity | 70 | 90 | > th | dose independent | rect. | 9 | 20 |
| 499 | 52.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 520 | 52.96 | temperature | 30 | 90 | < th | dose independent | rect. | 7 | 23 |
| 530 | 52.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 543 | 53.03 | temperature | 30 | 90 | < th | dose independent | rect. | 8 | 15 |
| 548 | 53.04 | temperature | 30 | 90 | < th | dose independent | rect. | 8 | 21 |
| 549 | 53.04 | humidity | 70 | 270 | > th | dose independent | rect. | 7 | 21 |
| 627 | 53.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 636 | 53.30 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 13 |
| 650 | 53.34 | humidity | 80 | 270 | > th | dose independent | rect. | 7 | 14 |
| 724 | 53.50 | radiation | 1 | 720 | < th | dose dependent | sin | 7 | NA |
| 790 | 53.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 11 |
| 807 | 53.63 | humidity | 50 | 270 | > th | dose dependent | sin | 22 | NA |
| 878 | 53.74 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 889 | 53.76 | humidity | 80 | 270 | > th | dose independent | rect. | 7 | 8 |