BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0578700 Os04g0578700|AK072398
(524 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00290.1 | chr4:123097-125300 REVERSE LENGTH=498 434 e-122
AT4G00234.1 | chr4:100919-101788 FORWARD LENGTH=264 212 4e-55
AT1G58200.1 | chr1:21548370-21552488 REVERSE LENGTH=679 52 8e-07
>AT4G00290.1 | chr4:123097-125300 REVERSE LENGTH=498
Length = 497
Score = 434 bits (1115), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/446 (49%), Positives = 303/446 (67%), Gaps = 18/446 (4%)
Query: 84 TSNPRF--NALP-GFLGASSICRAYSSDTGIKAEVPQNTVSNVPSTETVALGTSDGGSSW 140
+SN R +A P +LG SS RA+SS + + S V S T + + G+ W
Sbjct: 55 SSNIRLHNDAKPFNYLGHSSYARAFSSKS-------DDFGSIVASGVTGSGDGNGNGNDW 107
Query: 141 IDIFDNARKCTLDATTDAGKKVKELTDAITPHVQQFFDANPNLEKVVVPLGGTIFGTMMA 200
++ + + ++DA T+ KK K+++D + PHVQQF D+NP L+ V+VP+ T+ GT+ A
Sbjct: 108 VEKAKDVLQTSVDAVTETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTMTGTLFA 167
Query: 201 WFVMPIVLRRIHKYSIQSPISALLGSSTKNDVSYETSLWSALEDPAKYLITFMAFSEMAG 260
W VMP +LRR H Y++QS L + DV YE S W ALEDPA+YL+TF+AF+++A
Sbjct: 168 WVVMPRILRRFHTYAMQSSAKLLPVGFSNEDVPYEKSFWGALEDPARYLVTFIAFAQIAA 227
Query: 261 FTAPSISA--YLPQAWRGAIVLSFVWFLHRWKTNFITKVAASS----IDQTRLSAFDKIS 314
AP+ A Y +GA++LS VWFL+RWKTN IT++ ++ +D+ ++ DK+S
Sbjct: 228 MVAPTTIAAQYFSPTVKGAVILSLVWFLYRWKTNVITRMLSAKSFGGLDREKVLTLDKVS 287
Query: 315 SLGLIALGVMALAEACGVAAQSILXXXXXXXXXXXXXXRDVLGNMLSGFSLQFSSPFKAG 374
S+GL A+G+MA AEACGVA QSIL RD+LGN+LSG S+QFS PF G
Sbjct: 288 SVGLFAIGLMASAEACGVAVQSILTVGGVGGVATAFAARDILGNVLSGLSMQFSRPFSMG 347
Query: 375 EYIKAGSIEGKVIEIGLTSTELMNPEQLPVTVPNSLFSSQVIVNRSRAKWRSNVTKIPIR 434
+ IKAGS+EG+VIE+GLT+T L+N E+ PV VPNSLFSSQVIVN+SRA+WR+ +KIP++
Sbjct: 348 DTIKAGSVEGQVIEMGLTTTSLLNAEKFPVLVPNSLFSSQVIVNKSRAQWRAIASKIPLQ 407
Query: 435 IEDIEKVPAISEEIKVMLRSNPKVVLDSEAPAPYCYLSRLESSYGELTIGCNLTKMTKDE 494
I+D++ +P IS EIK MLRSN KV L E AP+CYLSR+E S+ ELTIGCNL +M K+E
Sbjct: 408 IDDLDMIPQISNEIKEMLRSNTKVFLGKE--APHCYLSRVEKSFAELTIGCNLIRMGKEE 465
Query: 495 CLSTTQGILLEPAKIIKLHGVELGST 520
+T Q +LLE KIIK HGV LG+T
Sbjct: 466 LYNTQQEVLLEAVKIIKKHGVSLGTT 491
>AT4G00234.1 | chr4:100919-101788 FORWARD LENGTH=264
Length = 263
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 111/265 (41%), Positives = 167/265 (63%), Gaps = 20/265 (7%)
Query: 84 TSNPRF--NALP-GFLGASSICRAYSSDTGIKAEVPQNTVSNVPSTETVALGTSDG-GSS 139
+SN R +A P +L SS RA+SS + + + V+ G+ DG G+
Sbjct: 5 SSNIRLHSDAKPFNYLSHSSYARAFSSKSDDFGSIVASGVT----------GSGDGNGND 54
Query: 140 WIDIFDNARKCTLDATTDAGKKVKELTDAITPHVQQFFDANPNLEKVVVPLGGTIFGTMM 199
W++ + + +++A + KK K+++D + PHVQQF D+NP L+ V+VP+ T+ GT+
Sbjct: 55 WVEKAKDVVQTSVNAVAETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTVTGTLF 114
Query: 200 AWFVMPIVLRRIHKYSIQSPISALLGSSTKNDVSYETSLWSALEDPAKYLITFMAFSEMA 259
AW VMP +LRR H Y++QS L + D+ YE S W ALEDPA+YL+TF+AF+++A
Sbjct: 115 AWIVMPRILRRFHTYAMQSSAKLLPVGFSNEDIPYEKSFWGALEDPARYLVTFIAFAQIA 174
Query: 260 GFTAPSISA--YLPQAWRGAIVLSFVWFLHRWKTNFITKVAAS----SIDQTRLSAFDKI 313
AP+ A Y +GA++LS VWFL+RWKTN IT++ ++ +D+ ++ DK+
Sbjct: 175 AMVAPTTIAAQYFSPTVKGAVILSVVWFLYRWKTNVITRMLSAKSFGGLDRDKVLTLDKV 234
Query: 314 SSLGLIALGVMALAEACGVAAQSIL 338
SS+GL A+G+MA AEACGVA QSIL
Sbjct: 235 SSVGLFAIGLMASAEACGVAVQSIL 259
>AT1G58200.1 | chr1:21548370-21552488 REVERSE LENGTH=679
Length = 678
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 11/200 (5%)
Query: 328 EACGVAAQSILXXXXXXXXXXXXXXRDVLGNMLSGFSLQFSSPFKAGEYI--KAGSIE-- 383
E G + Q L R++L N LS + + PF E+I K G E
Sbjct: 257 ELLGFSTQKWLTAGGLGTVLLTLAGREILTNFLSSIMIHATRPFVLNEWIQTKIGGYEVS 316
Query: 384 GKVIEIGLTS-TELMNPEQLPVTVPNSLFSSQVIVNRS-RAKWRSNVTKIPIRIEDIEKV 441
G V ++G S T + ++ V +PN FS ++ N + + WR T + I D+ K+
Sbjct: 317 GTVEQVGWWSPTIIRGDDREAVHIPNHQFSVNIVRNLTQKTHWRIK-THLAISHLDVSKI 375
Query: 442 PAISEEIKVMLRSNPKVVLDSEAPAPYCYLSRL--ESSYGELTIGCNLTKMTKDECLSTT 499
I +++ +L NP++ + + +L + E+ + I C + +E L
Sbjct: 376 NNIVADMRKVLSKNPQI--EQQKIHRRVFLEDIDPENQALRILISCFVKTSRFEEYLCVK 433
Query: 500 QGILLEPAKIIKLHGVELGS 519
+ +LL+ +I+ HG L +
Sbjct: 434 EAVLLDLLTVIRHHGARLAT 453
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.130 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,656,047
Number of extensions: 428311
Number of successful extensions: 1096
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1090
Number of HSP's successfully gapped: 4
Length of query: 524
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 421
Effective length of database: 8,282,721
Effective search space: 3487025541
Effective search space used: 3487025541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)