BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0576800 Os04g0576800|AK073542
(354 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0576800 3-oxo-5-alpha-steroid 4-dehydrogenase, C-termi... 622 e-179
Os07g0493400 3-oxo-5-alpha-steroid 4-dehydrogenase, C-termi... 181 6e-46
>Os04g0576800 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing
protein
Length = 354
Score = 622 bits (1605), Expect = e-179, Method: Compositional matrix adjust.
Identities = 310/354 (87%), Positives = 310/354 (87%)
Query: 1 METEGWPALQPLLCLAWIATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKTVRXXXXX 60
METEGWPALQPLLCLAWIATT GKTVR
Sbjct: 1 METEGWPALQPLLCLAWIATTLPIIVAALPIPAAAGGHLLRRLLSAFSSRGKTVRPSPAS 60
Query: 61 XXXXXXXXXXFTVPQKYFMHFYVVGVLATTILLLAIWFYAYMKMTPLLPESSSYSTIASH 120
FTVPQKYFMHFYVVGVLATTILLLAIWFYAYMKMTPLLPESSSYSTIASH
Sbjct: 61 SSGSSSSKAKFTVPQKYFMHFYVVGVLATTILLLAIWFYAYMKMTPLLPESSSYSTIASH 120
Query: 121 LVGSNSFSFGRVHSRTMGHKYHVWRTVFVLLLMEIQVLRRLYETEHVFHYSPSARMHIVG 180
LVGSNSFSFGRVHSRTMGHKYHVWRTVFVLLLMEIQVLRRLYETEHVFHYSPSARMHIVG
Sbjct: 121 LVGSNSFSFGRVHSRTMGHKYHVWRTVFVLLLMEIQVLRRLYETEHVFHYSPSARMHIVG 180
Query: 181 YLTGLFYYVAAPLSLASSCIPEAAEYLQGQVAEFIVKGRARMPDLVIDSSSLLQPLLKLG 240
YLTGLFYYVAAPLSLASSCIPEAAEYLQGQVAEFIVKGRARMPDLVIDSSSLLQPLLKLG
Sbjct: 181 YLTGLFYYVAAPLSLASSCIPEAAEYLQGQVAEFIVKGRARMPDLVIDSSSLLQPLLKLG 240
Query: 241 WTQWIGAVIFIWGSLHQIRCHAILGTLREHKDSDEYVIPCGDWFNRVSCPHYLAELVIYF 300
WTQWIGAVIFIWGSLHQIRCHAILGTLREHKDSDEYVIPCGDWFNRVSCPHYLAELVIYF
Sbjct: 241 WTQWIGAVIFIWGSLHQIRCHAILGTLREHKDSDEYVIPCGDWFNRVSCPHYLAELVIYF 300
Query: 301 GMLVASGGEDIPVWFLFVFVITNLSFAAVETHKWYLQKFEDYPRSRYAIIPFVC 354
GMLVASGGEDIPVWFLFVFVITNLSFAAVETHKWYLQKFEDYPRSRYAIIPFVC
Sbjct: 301 GMLVASGGEDIPVWFLFVFVITNLSFAAVETHKWYLQKFEDYPRSRYAIIPFVC 354
>Os07g0493400 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing
protein
Length = 99
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 83/90 (92%), Positives = 86/90 (95%)
Query: 265 GTLREHKDSDEYVIPCGDWFNRVSCPHYLAELVIYFGMLVASGGEDIPVWFLFVFVITNL 324
G+LREHKD DEYVIPCGD FNRVSCPHYLAELVIYFGMLVASG EDIPVWFLF+FVITNL
Sbjct: 10 GSLREHKDYDEYVIPCGDCFNRVSCPHYLAELVIYFGMLVASGAEDIPVWFLFIFVITNL 69
Query: 325 SFAAVETHKWYLQKFEDYPRSRYAIIPFVC 354
SFAAVET+ WYLQKFEDYPRSRYAIIPFVC
Sbjct: 70 SFAAVETYNWYLQKFEDYPRSRYAIIPFVC 99
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.140 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,628,440
Number of extensions: 406478
Number of successful extensions: 1157
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1159
Number of HSP's successfully gapped: 2
Length of query: 354
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 252
Effective length of database: 11,709,973
Effective search space: 2950913196
Effective search space used: 2950913196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 156 (64.7 bits)