BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0574800 Os04g0574800|Os04g0574800
         (273 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0574800  Similar to Dihydrodipicolinate synthase 1, chl...   531   e-151
Os04g0254000  Similar to Dihydrodipicolinate synthase 1, chl...   511   e-145

>Os04g0574800 Similar to Dihydrodipicolinate synthase 1, chloroplast precursor
           (EC 4.2.1.52) (DHDPS 1)
          Length = 273

 Score =  531 bits (1369), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 254/254 (100%), Positives = 254/254 (100%)

Query: 20  HLMSWDEHIMLIGHTVNCFGTKIKVVGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 79
           HLMSWDEHIMLIGHTVNCFGTKIKVVGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG
Sbjct: 20  HLMSWDEHIMLIGHTVNCFGTKIKVVGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 79

Query: 80  KTSVEGLISHFEAVLPMGPTIIYNVPSRTGQDIPPAVIEAVSSFSNMAGVKECVGHERVK 139
           KTSVEGLISHFEAVLPMGPTIIYNVPSRTGQDIPPAVIEAVSSFSNMAGVKECVGHERVK
Sbjct: 80  KTSVEGLISHFEAVLPMGPTIIYNVPSRTGQDIPPAVIEAVSSFSNMAGVKECVGHERVK 139

Query: 140 CYTDKGITIWSGNDDECHDSRWKYGATGVISVASNLIPGLMRKLMYEGENTALNDKLLPL 199
           CYTDKGITIWSGNDDECHDSRWKYGATGVISVASNLIPGLMRKLMYEGENTALNDKLLPL
Sbjct: 140 CYTDKGITIWSGNDDECHDSRWKYGATGVISVASNLIPGLMRKLMYEGENTALNDKLLPL 199

Query: 200 MKWLFCQPNPIALNTALAQLGVARPVFRLPYVPLPLEKRVEFVRIVESIGRENFVGQKEA 259
           MKWLFCQPNPIALNTALAQLGVARPVFRLPYVPLPLEKRVEFVRIVESIGRENFVGQKEA
Sbjct: 200 MKWLFCQPNPIALNTALAQLGVARPVFRLPYVPLPLEKRVEFVRIVESIGRENFVGQKEA 259

Query: 260 RVLDDDDFVLISRY 273
           RVLDDDDFVLISRY
Sbjct: 260 RVLDDDDFVLISRY 273



>Os04g0254000 Similar to Dihydrodipicolinate synthase 1, chloroplast precursor
           (EC 4.2.1.52) (DHDPS 1)
          Length = 380

 Score =  511 bits (1317), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 239/254 (94%), Positives = 246/254 (96%)

Query: 20  HLMSWDEHIMLIGHTVNCFGTKIKVVGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 79
           HLMSWDEHIMLIGHTVNCFG K+KVVGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG
Sbjct: 127 HLMSWDEHIMLIGHTVNCFGAKVKVVGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 186

Query: 80  KTSVEGLISHFEAVLPMGPTIIYNVPSRTGQDIPPAVIEAVSSFSNMAGVKECVGHERVK 139
           KTS+EGLISHFEAVLPMGPTIIYNVPSRTGQDIPPAVIEAVSSF+N+AGVKECVGHERVK
Sbjct: 187 KTSIEGLISHFEAVLPMGPTIIYNVPSRTGQDIPPAVIEAVSSFTNLAGVKECVGHERVK 246

Query: 140 CYTDKGITIWSGNDDECHDSRWKYGATGVISVASNLIPGLMRKLMYEGENTALNDKLLPL 199
           CYTDKGITIWSGNDDECHDSRWKYGATGVISVASNLIPGLM  LMYEGEN  LN+KL PL
Sbjct: 247 CYTDKGITIWSGNDDECHDSRWKYGATGVISVASNLIPGLMHDLMYEGENKTLNEKLFPL 306

Query: 200 MKWLFCQPNPIALNTALAQLGVARPVFRLPYVPLPLEKRVEFVRIVESIGRENFVGQKEA 259
           MKWLFCQPNPIALNTALAQLGV RPVFRLPYVPLPLEKRVEFVRIVESIGRENFVG+ EA
Sbjct: 307 MKWLFCQPNPIALNTALAQLGVVRPVFRLPYVPLPLEKRVEFVRIVESIGRENFVGENEA 366

Query: 260 RVLDDDDFVLISRY 273
           RVLDDDDFVL+SRY
Sbjct: 367 RVLDDDDFVLVSRY 380



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,136,407
Number of extensions: 374518
Number of successful extensions: 627
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 627
Number of HSP's successfully gapped: 2
Length of query: 273
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 174
Effective length of database: 11,866,615
Effective search space: 2064791010
Effective search space used: 2064791010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)