Os04g0574800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dihydrodipicolinate synthase 1, chloroplast precursor (EC 4.2.1.52) (DHDPS 1).
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Os04g0574800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Dihydrodipicolinate synthase 1, chloroplast precursor (EC 4.2.1.52) (DHDPS 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 468.47 | 1.02 | 3.85 | 1.35 | 0.541 | -0.756 | 1.5 | -0.73 | -0.386 | 15.4 | 1006 | 310 | -- | -- |
| 471.35 | 1.01 | 3.85 | 1.33 | 0.549 | -0.767 | 1.44 | -- | -0.361 | 15.5 | 1006 | 310 | -- | -- |
| 475.42 | 1.02 | 3.85 | 1.38 | 0.548 | -0.731 | -- | -0.64 | -0.388 | 15.6 | 1006 | 310 | -- | -- |
| 477.53 | 1.02 | 3.85 | 1.35 | 0.571 | -0.771 | -- | -- | -0.351 | 16 | 1006 | 310 | -- | -- |
| 489.74 | 1.03 | 3.85 | 1.36 | -- | -0.768 | -- | -0.677 | -0.427 | -- | 1006 | 263 | -- | -- |
| 514.25 | 1.06 | 3.95 | 1.39 | 0.55 | -- | 1.57 | -- | -0.772 | 16 | -- | -- | -- | -- |
| 520.93 | 1.07 | 3.95 | 1.41 | 0.571 | -- | -- | -- | -0.763 | 16.6 | -- | -- | -- | -- |
| 492.25 | 1.03 | 3.86 | 1.37 | -- | -0.779 | -- | -- | -0.407 | -- | 1006 | 255 | -- | -- |
| 525.98 | 1.07 | 3.88 | -- | 0.545 | -0.796 | -- | -- | -0.485 | 16 | 1006 | 291 | -- | -- |
| 538.31 | 1.08 | 3.94 | 1.38 | -- | -- | -- | -- | -0.778 | -- | -- | -- | -- | -- |
| 573.06 | 1.12 | 3.98 | -- | 0.545 | -- | -- | -- | -0.919 | 16.6 | -- | -- | -- | -- |
| 541.11 | 1.08 | 3.88 | -- | -- | -0.808 | -- | -- | -0.512 | -- | 1006 | 300 | -- | -- |
| 588.86 | 1.13 | 3.98 | -- | -- | -- | -- | -- | -0.931 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 464.08 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 6 | 11 |
| 3 | 465.21 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 6 | 9 |
| 8 | 466.78 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 9 | 466.85 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 4 | 19 |
| 10 | 466.89 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 5 | 17 |
| 16 | 468.32 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 2 | 16 |
| 17 | 468.32 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 2 | 16 |
| 19 | 468.43 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 2 | 16 |
| 26 | 468.74 | atmosphere | 1005.0 | 270 | > th | dose independent | sin | 0 | NA |
| 46 | 469.63 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 23 | 20 |
| 53 | 469.78 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 18 |
| 71 | 470.07 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 72 | 470.07 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 2 |
| 73 | 470.12 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 85 | 470.22 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 87 | 470.27 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 2 | NA |
| 102 | 470.57 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 145 | 471.36 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 147 | 471.42 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 162 | 471.65 | atmosphere | 1005.0 | 30 | < th | dose independent | rect. | 6 | 12 |
| 178 | 471.93 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 179 | 471.93 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 6 |
| 189 | 472.07 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 1 | NA |
| 190 | 472.07 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 1 | NA |
| 192 | 472.07 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 196 | 472.09 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 6 |
| 206 | 472.18 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 7 |
| 263 | 472.63 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 11 |
| 264 | 472.63 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 11 |
| 268 | 472.66 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 11 |
| 316 | 473.07 | atmosphere | 1005.0 | 30 | < th | dose independent | sin | 23 | NA |
| 319 | 473.08 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 346 | 473.29 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 10 |
| 359 | 473.35 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 396 | 473.75 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 407 | 473.91 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 408 | 473.91 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 19 |
| 409 | 473.91 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 17 |
| 410 | 473.91 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 19 |
| 415 | 473.94 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 17 |
| 417 | 473.94 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 449 | 474.13 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 476 | 474.22 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 487 | 474.26 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 504 | 474.30 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 521 | 474.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 569 | 474.44 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 615 | 474.52 | atmosphere | 1005.0 | 30 | < th | dose independent | rect. | 6 | 17 |
| 634 | 474.55 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 635 | 474.55 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 23 |
| 636 | 474.56 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 668 | 474.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 686 | 474.66 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 690 | 474.68 | precipitation | 0.1 | 14400 | > th | dose independent | no | NA | NA |
| 691 | 474.68 | precipitation | 0.1 | 14400 | < th | dose independent | no | NA | NA |
| 693 | 474.68 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 694 | 474.68 | precipitation | 0.1 | 14400 | < th | dose dependent | no | NA | NA |
| 696 | 474.68 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 23 |
| 704 | 474.73 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 5 | 14 |
| 781 | 474.93 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 784 | 474.93 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 23 |
| 788 | 474.95 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 845 | 475.12 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 15 |
| 872 | 475.20 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 884 | 475.25 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 922 | 475.42 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 958 | 475.67 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 9 | 2 |