Os04g0254000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dihydrodipicolinate synthase 1, chloroplast precursor (EC 4.2.1.52) (DHDPS 1).
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Os04g0254000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Dihydrodipicolinate synthase 1, chloroplast precursor (EC 4.2.1.52) (DHDPS 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.11 | 0.24 | 10.2 | 1.6 | 0.827 | 0.982 | 0.296 | 0.597 | 0.0594 | 15.8 | 23.12 | 15 | -- | -- |
| 26.53 | 0.24 | 10.2 | 1.66 | 0.82 | 0.888 | 0.125 | -- | 0.0721 | 15.8 | 23.22 | 10 | -- | -- |
| 26.29 | 0.239 | 10.2 | 1.6 | 0.827 | 1 | -- | 0.536 | 0.0661 | 15.8 | 22.85 | 10 | -- | -- |
| 26.57 | 0.24 | 10.2 | 1.66 | 0.822 | 0.896 | -- | -- | 0.0733 | 15.8 | 23.22 | 10 | -- | -- |
| 61.64 | 0.368 | 10.2 | 1.55 | -- | 0.537 | -- | 0.0466 | -0.00269 | -- | 22.85 | 10 | -- | -- |
| 36.63 | 0.284 | 10.2 | 1.48 | 0.729 | -- | 0.175 | -- | -0.0489 | 16.3 | -- | -- | -- | -- |
| 36.71 | 0.284 | 10.2 | 1.48 | 0.73 | -- | -- | -- | -0.048 | 16.3 | -- | -- | -- | -- |
| 61.63 | 0.366 | 10.2 | 1.55 | -- | 0.534 | -- | -- | -0.00224 | -- | 22.8 | 12 | -- | -- |
| 93.4 | 0.453 | 10.3 | -- | 0.724 | 0.255 | -- | -- | -0.186 | 16.2 | 22.78 | 10 | -- | -- |
| 65.39 | 0.378 | 10.2 | 1.45 | -- | -- | -- | -- | -0.0674 | -- | -- | -- | -- | -- |
| 94.24 | 0.454 | 10.3 | -- | 0.701 | -- | -- | -- | -0.213 | 16.3 | -- | -- | -- | -- |
| 110.11 | 0.489 | 10.3 | -- | -- | -0.82 | -- | -- | -0.319 | -- | 35.71 | 207 | -- | -- |
| 120.72 | 0.513 | 10.3 | -- | -- | -- | -- | -- | -0.228 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.39 | temperature | 25 | 90 | < th | dose dependent | sin | 12 | NA |
| 11 | 26.62 | temperature | 15 | 90 | > th | dose dependent | sin | 11 | NA |
| 12 | 26.63 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 17 |
| 17 | 26.73 | temperature | 15 | 10 | > th | dose dependent | sin | 10 | NA |
| 19 | 26.73 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 14 |
| 31 | 26.80 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 37 | 26.83 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 48 | 26.89 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 49 | 26.90 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 52 | 26.92 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 61 | 26.95 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 66 | 26.97 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 70 | 26.98 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 73 | 26.99 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 74 | 26.99 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 75 | 26.99 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 80 | 27.01 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 86 | 27.04 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 90 | 27.05 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 93 | 27.06 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 18 |
| 102 | 27.07 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 121 | 27.09 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 129 | 27.12 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 16 |
| 134 | 27.13 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 12 |
| 148 | 27.15 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 16 |
| 153 | 27.15 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 312 | 27.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 362 | 27.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 13 |
| 421 | 27.65 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 14 |
| 526 | 27.86 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 10 |
| 543 | 27.90 | temperature | 20 | 30 | > th | dose independent | sin | 11 | NA |
| 574 | 27.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 620 | 28.04 | temperature | 20 | 30 | < th | dose independent | rect. | 17 | 19 |
| 646 | 28.09 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 664 | 28.13 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 14 |
| 678 | 28.16 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 683 | 28.17 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 12 |
| 734 | 28.28 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 739 | 28.29 | temperature | 20 | 10 | < th | dose independent | rect. | 9 | 21 |
| 811 | 28.39 | temperature | 20 | 30 | < th | dose independent | rect. | 5 | 23 |
| 815 | 28.39 | temperature | 20 | 30 | < th | dose independent | rect. | 23 | 23 |
| 819 | 28.40 | temperature | 20 | 30 | < th | dose independent | no | NA | NA |
| 821 | 28.40 | temperature | 20 | 30 | < th | dose independent | rect. | 11 | 23 |
| 823 | 28.40 | temperature | 20 | 30 | < th | dose independent | rect. | 19 | 23 |
| 824 | 28.40 | temperature | 20 | 30 | < th | dose independent | rect. | 21 | 23 |
| 856 | 28.44 | temperature | 20 | 30 | < th | dose independent | rect. | 3 | 23 |
| 865 | 28.45 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 876 | 28.47 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 14 |
| 879 | 28.47 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 23 |
| 906 | 28.51 | temperature | 20 | 30 | > th | dose independent | rect. | 13 | 23 |
| 911 | 28.52 | temperature | 20 | 30 | < th | dose independent | sin | 11 | NA |