BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0564500 Os04g0564500|J065115E08
         (99 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0564500  Protein of unknown function DUF833 family protein   204   1e-53
Os09g0323500  Protein of unknown function DUF833 family protein    97   3e-21

>Os04g0564500 Protein of unknown function DUF833 family protein
          Length = 99

 Score =  204 bits (519), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  MIQGNQCPLEYAEEIAKEADQYNGFNLVLADVQSGNMAYISNRPEGDPVVQKVLPGFHVL 60
          MIQGNQCPLEYAEEIAKEADQYNGFNLVLADVQSGNMAYISNRPEGDPVVQKVLPGFHVL
Sbjct: 1  MIQGNQCPLEYAEEIAKEADQYNGFNLVLADVQSGNMAYISNRPEGDPVVQKVLPGFHVL 60

Query: 61 SNAAIDCPWPKVSSSVLSLGVTCFLGSCDILEIKVSCAS 99
          SNAAIDCPWPKVSSSVLSLGVTCFLGSCDILEIKVSCAS
Sbjct: 61 SNAAIDCPWPKVSSSVLSLGVTCFLGSCDILEIKVSCAS 99



>Os09g0323500 Protein of unknown function DUF833 family protein
          Length = 266

 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 1/72 (1%)

Query: 1   MIQGNQCPLEYAEEIAKEADQYNGFNLVLADVQSGNMAYISNRPEGDP-VVQKVLPGFHV 59
            +Q N+ PLE A E+AKEAD+YNGFNLVLAD+ +  M Y+SNRP+G P  +Q V PG HV
Sbjct: 89  FLQSNKSPLEVATEVAKEADEYNGFNLVLADLTTNVMVYVSNRPKGQPATIQLVSPGLHV 148

Query: 60  LSNAAIDCPWPK 71
           LSNA +D PW K
Sbjct: 149 LSNARLDSPWQK 160



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,246,396
Number of extensions: 112698
Number of successful extensions: 311
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 2
Length of query: 99
Length of database: 17,035,801
Length adjustment: 68
Effective length of query: 31
Effective length of database: 13,485,249
Effective search space: 418042719
Effective search space used: 418042719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)