Os09g0323500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF833 family protein.
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Os09g0323500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF833 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 270.56 | 0.766 | 5.68 | 8.2 | 0.326 | 107 | -0.273 | 319 | 0.0989 | 4.9 | 1 | 1442 | 11 | 1 |
| 331.22 | 0.854 | 2.98 | -0.42 | 0.435 | 1.71 | -0.922 | -- | -0.00269 | 4.9 | 7.181 | 24 | 11.7 | 1.93 |
| 265.24 | 0.759 | 5.6 | 7.97 | 0.329 | 107 | -- | 320 | 0.103 | 5.19 | 1.011 | 1363 | 11 | 0.985 |
| 333.12 | 0.85 | 2.98 | -0.421 | 0.43 | 1.97 | -- | -- | 0.00103 | 4.99 | 6.98 | 21 | 11.7 | 1.84 |
| 270.21 | 0.766 | 5.58 | 7.91 | -- | 107 | -- | 320 | 0.107 | -- | 1.081 | 1349 | 11 | 0.926 |
| 334.84 | 0.858 | 2.98 | -0.406 | 0.428 | -- | -0.945 | -- | -0.00826 | 4.98 | -- | -- | -- | -- |
| 337.1 | 0.86 | 2.98 | -0.404 | 0.423 | -- | -- | -- | -0.00352 | 5.16 | -- | -- | -- | -- |
| 342.78 | 0.862 | 2.98 | -0.412 | -- | 1.91 | -- | -- | 0.0117 | -- | 6.851 | 26 | 11.4 | 2.17 |
| 337.89 | 0.856 | 2.97 | -- | 0.422 | 1.8 | -- | -- | 0.0473 | 5.04 | 7.884 | 30 | 11.9 | 1.42 |
| 346.49 | 0.87 | 2.98 | -0.389 | -- | -- | -- | -- | 0.00718 | -- | -- | -- | -- | -- |
| 341.4 | 0.864 | 2.97 | -- | 0.416 | -- | -- | -- | 0.0415 | 5.19 | -- | -- | -- | -- |
| 347.21 | 0.868 | 2.97 | -- | -- | 1.75 | -- | -- | 0.0565 | -- | 7.859 | 28 | 11.8 | 1.44 |
| 350.48 | 0.874 | 2.97 | -- | -- | -- | -- | -- | 0.0503 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 270.56 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 270.56 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 286.04 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 4 | 286.04 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 5 | 286.32 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 8 | 286.63 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 14 | 286.78 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 58 | 289.59 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 92 | 295.66 | wind | 1.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 114 | 298.78 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 138 | 301.42 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 160 | 301.81 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 165 | 302.45 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 180 | 303.79 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 182 | 303.79 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 184 | 303.79 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 235 | 303.79 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 237 | 303.79 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 239 | 303.79 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 293 | 303.92 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 22 | 10 |
| 301 | 304.44 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 305 | 304.50 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 337 | 305.22 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 365 | 305.95 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 370 | 306.15 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 377 | 306.38 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 381 | 306.42 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 411 | 306.55 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 22 | NA |
| 431 | 307.05 | wind | 1.0 | 90 | < th | dose dependent | rect. | 23 | 2 |
| 463 | 307.17 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 20 | 3 |
| 482 | 307.42 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 483 | 307.43 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 491 | 307.48 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 21 |
| 502 | 307.49 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 510 | 307.54 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 21 | 1 |
| 514 | 307.56 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 22 | 12 |
| 601 | 309.12 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 20 | 5 |
| 636 | 309.32 | radiation | 1.0 | 1440 | < th | dose independent | sin | 20 | NA |
| 655 | 309.47 | radiation | 1.0 | 1440 | > th | dose independent | sin | 20 | NA |
| 681 | 309.69 | humidity | 90.0 | 270 | > th | dose dependent | sin | 15 | NA |
| 703 | 309.82 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 14 |
| 705 | 309.84 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 21 | 20 |
| 706 | 309.84 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 19 | 22 |
| 732 | 310.13 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 742 | 310.22 | atmosphere | 1005.0 | 10 | < th | dose dependent | sin | 8 | NA |
| 757 | 310.38 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 1 |
| 758 | 310.38 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 772 | 310.58 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 793 | 310.62 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 15 |
| 802 | 310.67 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 21 |
| 820 | 310.72 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 822 | 310.74 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 865 | 311.00 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 7 |
| 868 | 311.02 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 22 | 7 |
| 875 | 311.12 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 8 | 3 |
| 892 | 311.30 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 897 | 311.34 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 906 | 311.46 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 913 | 311.53 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 921 | 311.58 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 4 |
| 922 | 311.59 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 971 | 311.95 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 22 | 7 |