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Os04g0564500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF833 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.83 (0.0262) R2 : 0.625
β1 : -2.46 (0.096) R2dD : 0.56 R2D : 0.381
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.832 (0.056) R2dN8 : 0.243 R2N8 : 0.0648
σ : 0.492
deviance : 110.94
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
85.96 0.432 8.52 -1.17 0.505 127 -0.4 273 -0.853 18.7 15 90 -- --
87.05 0.438 7.85 -2.54 0.509 -2.36 -0.365 -- -0.844 18.9 15 90 -- --
86.22 0.432 8.53 -1.16 0.503 128 -- 275 -0.855 19.1 14.97 94 -- --
86.22 0.432 7.85 -2.57 0.504 -2.37 -- -- -0.856 19.1 15.12 253 -- --
99.57 0.465 8.53 -1.14 -- 128 -- 275 -0.864 -- 15 95 -- --
97.65 0.463 7.84 -2.45 0.495 -- -0.544 -- -0.819 18.3 -- -- -- --
98 0.464 7.84 -2.45 0.497 -- -- -- -0.822 18.9 -- -- -- --
99.57 0.465 7.84 -2.59 -- -2.3 -- -- -0.864 -- 15.23 262 -- --
253.89 0.746 7.78 -- 0.53 -1.05 -- -- -0.556 18.7 15.12 253 -- --
110.94 0.492 7.83 -2.46 -- -- -- -- -0.832 -- -- -- -- --
256.08 0.749 7.78 -- 0.527 -- -- -- -0.55 18.6 -- -- -- --
268.57 0.766 7.77 -- -- -0.994 -- -- -0.564 -- 15.12 253 -- --
270.54 0.768 7.77 -- -- -- -- -- -0.559 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 79.89 wind 1.0 14400 < th dose independent rect. 5 1
2 80.74 wind 1.0 14400 < th dose dependent rect. 5 1
3 81.28 wind 1.0 14400 < th dose dependent rect. 2 4
4 81.33 wind 1.0 14400 > th dose independent rect. 5 1
5 81.77 temperature 15.0 720 > th dose independent rect. 6 15
7 81.91 temperature 15.0 720 > th dose independent rect. 9 10
11 82.17 precipitation 0.1 1440 < th dose independent rect. 9 8
12 82.17 precipitation 0.1 1440 < th dose dependent rect. 9 8
14 82.22 precipitation 0.1 720 < th dose independent sin 21 NA
15 82.22 precipitation 0.1 720 < th dose dependent sin 21 NA
20 82.40 temperature 15.0 90 > th dose independent sin 18 NA
21 82.40 humidity 90.0 720 < th dose independent rect. 9 9
22 82.41 temperature 15.0 90 > th dose independent sin 8 NA
26 82.50 temperature 15.0 720 > th dose independent sin 21 NA
28 82.55 atmosphere 1015.0 43200 < th dose independent rect. 18 2
40 82.64 humidity 60.0 43200 < th dose dependent rect. 21 12
42 82.65 humidity 60.0 43200 < th dose dependent rect. 3 6
49 82.67 temperature 15.0 720 > th dose independent rect. 9 17
51 82.73 humidity 90.0 720 < th dose independent sin 23 NA
53 82.74 humidity 60.0 43200 < th dose dependent rect. 19 14
60 82.85 wind 1.0 14400 < th dose independent rect. 2 4
68 82.92 humidity 90.0 720 < th dose independent rect. 5 14
85 83.01 precipitation 0.1 1440 < th dose independent rect. 10 4
88 83.01 precipitation 0.1 1440 < th dose dependent rect. 10 4
91 83.04 temperature 20.0 720 > th dose independent rect. 2 5
94 83.05 temperature 15.0 720 > th dose independent rect. 7 19
101 83.08 humidity 90.0 720 < th dose independent rect. 24 18
114 83.15 precipitation 0.1 1440 > th dose independent rect. 7 10
123 83.19 temperature 20.0 1440 < th dose dependent rect. 7 10
136 83.23 humidity 90.0 1440 > th dose dependent rect. 8 9
152 83.28 temperature 20.0 720 > th dose independent rect. 4 2
164 83.31 precipitation 0.1 1440 > th dose dependent rect. 7 10
172 83.36 radiation 40.0 43200 < th dose independent rect. 16 12
178 83.38 radiation 40.0 43200 < th dose independent rect. 16 10
187 83.41 atmosphere 1015.0 43200 > th dose dependent rect. 11 10
195 83.46 atmosphere 1015.0 43200 > th dose dependent rect. 12 6
223 83.60 atmosphere 1015.0 43200 > th dose dependent rect. 13 2
233 83.65 precipitation 0.1 1440 > th dose independent rect. 6 14
246 83.69 humidity 50.0 43200 < th dose dependent sin 9 NA
299 83.86 precipitation 0.1 1440 > th dose independent sin 23 NA
303 83.87 temperature 15.0 270 > th dose independent rect. 6 22
313 83.90 temperature 15.0 270 > th dose independent rect. 20 23
322 83.93 radiation 10.0 720 < th dose independent rect. 21 10
331 83.95 atmosphere 1015.0 43200 > th dose dependent rect. 16 6
354 84.02 atmosphere 1015.0 43200 < th dose independent rect. 14 6
361 84.04 temperature 15.0 1440 > th dose independent rect. 5 11
379 84.09 atmosphere 1015.0 43200 > th dose dependent rect. 20 1
385 84.10 precipitation 0.1 1440 > th dose independent rect. 10 4
391 84.11 atmosphere 1015.0 43200 > th dose independent rect. 19 1
392 84.11 atmosphere 1015.0 43200 > th dose independent rect. 14 7
398 84.13 temperature 15.0 720 > th dose independent rect. 14 7
405 84.15 temperature 15.0 10 > th dose independent sin 7 NA
438 84.15 temperature 15.0 10 > th dose independent sin 1 NA
453 84.17 humidity 60.0 43200 < th dose independent rect. 20 13
472 84.21 temperature 15.0 43200 > th dose independent rect. 3 1
490 84.25 humidity 90.0 1440 > th dose independent rect. 9 8
519 84.34 atmosphere 1015.0 43200 > th dose independent rect. 14 1
540 84.39 radiation 40.0 43200 > th dose dependent rect. 14 18
543 84.40 humidity 50.0 43200 < th dose dependent rect. 14 22
544 84.41 wind 1.0 14400 > th dose independent rect. 2 4
546 84.41 humidity 50.0 43200 > th dose dependent rect. 5 1
551 84.42 humidity 50.0 43200 < th dose independent sin 9 NA
554 84.44 humidity 90.0 1440 < th dose independent rect. 9 5
564 84.45 precipitation 0.1 1440 > th dose independent rect. 6 21
569 84.47 humidity 60.0 43200 < th dose dependent rect. 19 1
570 84.47 precipitation 0.1 1440 > th dose dependent rect. 15 2
573 84.48 humidity 50.0 43200 < th dose dependent sin 12 NA
574 84.48 radiation 40.0 43200 > th dose dependent rect. 14 2
598 84.51 precipitation 0.1 1440 > th dose independent rect. 15 2
614 84.55 humidity 50.0 43200 < th dose dependent rect. 14 20
627 84.58 temperature 15.0 720 > th dose independent rect. 16 9
642 84.61 precipitation 0.1 1440 < th dose independent rect. 6 21
644 84.61 precipitation 0.1 1440 < th dose dependent rect. 6 21
654 84.63 temperature 20.0 720 < th dose dependent sin 20 NA
660 84.65 temperature 15.0 43200 > th dose independent rect. 3 11
670 84.67 temperature 20.0 1440 < th dose dependent sin 23 NA
679 84.69 temperature 15.0 43200 < th dose independent rect. 3 1
685 84.69 humidity 50.0 43200 < th dose independent rect. 14 22
690 84.71 humidity 50.0 43200 > th dose independent sin 10 NA
693 84.71 humidity 50.0 43200 > th dose independent rect. 19 15
694 84.71 temperature 15.0 270 > th dose independent rect. 22 23
705 84.73 temperature 15.0 43200 < th dose independent rect. 2 5
706 84.73 temperature 15.0 43200 > th dose independent rect. 2 6
724 84.75 temperature 15.0 43200 < th dose independent rect. 2 3
745 84.76 temperature 15.0 720 > th dose dependent rect. 2 5
751 84.77 humidity 90.0 1440 > th dose dependent rect. 11 3
754 84.78 temperature 15.0 43200 > th dose independent sin 5 NA
791 84.81 temperature 15.0 43200 > th dose independent rect. 23 9
798 84.81 atmosphere 1015.0 43200 > th dose dependent sin 18 NA
800 84.82 radiation 40.0 14400 < th dose independent rect. 6 2
817 84.83 temperature 15.0 43200 < th dose independent rect. 23 8
827 84.84 precipitation 0.1 1440 > th dose independent rect. 12 5
834 84.84 temperature 15.0 270 > th dose independent rect. 13 13
842 84.84 radiation 10.0 720 < th dose dependent rect. 21 19
844 84.85 temperature 15.0 43200 > th dose independent rect. 23 6
854 84.85 temperature 20.0 43200 < th dose dependent rect. 15 2
864 84.86 temperature 15.0 43200 > th dose independent rect. 20 11
867 84.86 temperature 15.0 43200 < th dose independent rect. 2 12
898 84.87 humidity 50.0 43200 < th dose independent rect. 16 21
926 84.89 radiation 1.0 14400 > th dose independent rect. 9 4
936 84.89 temperature 15.0 43200 < th dose independent rect. 23 12
942 84.89 temperature 15.0 43200 < th dose independent rect. 23 15
948 84.89 humidity 50.0 43200 > th dose independent rect. 13 21
955 84.90 humidity 90.0 1440 < th dose independent rect. 11 3
998 84.92 temperature 15.0 43200 < th dose independent sin 7 NA
1000 84.92 temperature 15.0 43200 > th dose independent rect. 23 1