BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0552700 Os04g0552700|AK121993
(311 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0552700 Zinc finger, C2H2-type domain containing protein 443 e-125
Os02g0659500 Zinc finger, C2H2-type domain containing protein 223 2e-58
Os10g0555300 Zinc finger, C2H2-type domain containing protein 161 4e-40
>Os04g0552700 Zinc finger, C2H2-type domain containing protein
Length = 311
Score = 443 bits (1139), Expect = e-125, Method: Compositional matrix adjust.
Identities = 229/311 (73%), Positives = 229/311 (73%)
Query: 1 MAKNTCKLCYRRFGNPRALAGHMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKRPI 60
MAKNTCKLCYRRFGNPRALAGHMR AKRPI
Sbjct: 1 MAKNTCKLCYRRFGNPRALAGHMRSHSVAASRSQISSTSSASTSVAVGDDDGGGDAKRPI 60
Query: 61 QGYVLREKPKRRVRLAESDFSDRESETEYYSSPPHGKRANTGSGDVEQVSSVSDATSEED 120
QGYVLREKPKRRVRLAESDFSDRESETEYYSSPPHGKRANTGSGDVEQVSSVSDATSEED
Sbjct: 61 QGYVLREKPKRRVRLAESDFSDRESETEYYSSPPHGKRANTGSGDVEQVSSVSDATSEED 120
Query: 121 VALSLMMLSRDTWPATXXXXXXYRLRXXXXXXXXXXXXXXXXXXXXXXQKRTRFQCPACK 180
VALSLMMLSRDTWPAT YRLR QKRTRFQCPACK
Sbjct: 121 VALSLMMLSRDTWPATPPPPPPYRLRGAGYDDGSDGGDAPPAPAAAAAQKRTRFQCPACK 180
Query: 181 KVFRSYQALGGHRASHMRGGRGGCCAXXXXXXXXXXXXXXXXXECDGGEEEGAKPHPHEC 240
KVFRSYQALGGHRASHMRGGRGGCCA ECDGGEEEGAKPHPHEC
Sbjct: 181 KVFRSYQALGGHRASHMRGGRGGCCAPPPNPPPSPATPLQPLPECDGGEEEGAKPHPHEC 240
Query: 241 PYCFRVFASGQALGGHKRSQLCSXXXXXXSGDDIPAMIKSNGFIDLNLPAPFDDVELSAV 300
PYCFRVFASGQALGGHKRSQLCS SGDDIPAMIKSNGFIDLNLPAPFDDVELSAV
Sbjct: 241 PYCFRVFASGQALGGHKRSQLCSAAAAAASGDDIPAMIKSNGFIDLNLPAPFDDVELSAV 300
Query: 301 SDPFLSSKPGS 311
SDPFLSSKPGS
Sbjct: 301 SDPFLSSKPGS 311
>Os02g0659500 Zinc finger, C2H2-type domain containing protein
Length = 341
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 150/338 (44%), Positives = 170/338 (50%), Gaps = 29/338 (8%)
Query: 1 MAKNTCKLCYRRFGNPRALAGHMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA---- 56
MAKN CKLCYRRF +PRALAGHMR +
Sbjct: 1 MAKNACKLCYRRFASPRALAGHMRSHSVAAANAAAAAAAAAAAKLQISSASSASTSFTAA 60
Query: 57 ---------------KRPIQGYVLREKPKRRVRLAESDFSDRESETEYYSSPP-HGKRAN 100
K+P+ Y LRE PKR +R++E FSDRESE E +P G RA
Sbjct: 61 DEEEEEEEEEEDVGFKKPLSIYALRENPKRSLRVSEYAFSDRESEAESTPTPAAKGLRAG 120
Query: 101 TGSGDV--EQVSSVSDA-TSEEDVALSLMMLSRDTWPATXXXXXXYRLRXXXXXX-XXXX 156
G G E +SS+S A T EE+VAL+LMMLSRDTWP+
Sbjct: 121 GGGGGGDGEPMSSLSYAGTPEEEVALALMMLSRDTWPSVERGGGGGEYSDDGSDDGYALP 180
Query: 157 XXXXXXXXXXXXQKRTRFQCPACKKVFRSYQALGGHRASHMRGGRGGCCAXXXXXXXXXX 216
+KRTRFQCPACKKVFRSYQALGGHRASH+RGGRGGCCA
Sbjct: 181 PPSPAPAPAPVPEKRTRFQCPACKKVFRSYQALGGHRASHVRGGRGGCCAPPVAPPPQPH 240
Query: 217 XXXXXXXECDGGEEEGAKPHPHECPYCFRVFASGQALGGHKRSQLCS-----XXXXXXSG 271
G E+ K PHECPYC+RVFASGQALGGHK+S +CS G
Sbjct: 241 PQPPLPEHDAGEEDMDGKAPPHECPYCYRVFASGQALGGHKKSHVCSAAAAAAHAQTPGG 300
Query: 272 DDIPAMIKSNGFIDLNLPAPFDDVELSAVSDPFLSSKP 309
P K G IDLN P D+VELSAVSDP S P
Sbjct: 301 GAPPPQPKILGMIDLNFAPPVDEVELSAVSDPHFPSNP 338
>Os10g0555300 Zinc finger, C2H2-type domain containing protein
Length = 359
Score = 161 bits (408), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 125/374 (33%), Positives = 152/374 (40%), Gaps = 85/374 (22%)
Query: 1 MAKNTCKLCYRRFGNPRALAGHMRXXX-----------XXXXXXXXXXXXXXXXXXXXXX 49
M K+TCKLC+RRF N RAL GHMR
Sbjct: 1 MDKHTCKLCFRRFHNGRALGGHMRSHVMAAAAAAAYCPSSPAMSLASTSSTEIEMDEKKE 60
Query: 50 XXXXXXAKRPIQGYVLREKPKRRVRLAESDFS----------------DRESETEYYSSP 93
++ + YVLRE PKR +++ +FS D ES+TE SSP
Sbjct: 61 MTKKTEQEKTLTSYVLRENPKRSYKVSAGEFSGGGGGGGGGGESSVVQDGESDTE--SSP 118
Query: 94 PHG---------------KRANTGSGDVEQVSSVSDATSEEDVALSLMMLSRDTWPATXX 138
P G R + D E SSVSDAT+EEDVA+SL+MLSRD+W +
Sbjct: 119 PRGGAGSFFAVSRRRSKRARRRRRAPDPEPASSVSDATTEEDVAMSLLMLSRDSWTRSRS 178
Query: 139 XXXXYR------------------------LRXXXXXXXXXXXXXXXXXXXXXXQKRTRF 174
+ R + +RF
Sbjct: 179 EHETHHRGASSEAEQNNNNVVNVFDEEDEDARDVAGEDHDEELSYGGGEAAAARHRTSRF 238
Query: 175 QCPACKKVFRSYQALGGHRASHMRGGRGGCCAXXXXXXXXXXXXXXXXXECDGGEEEGAK 234
QC AC+KVFRSYQALGGHRAS RG GGC
Sbjct: 239 QCGACRKVFRSYQALGGHRASLKRGKGGGCVPPPRPAPASSAAAPAI------------- 285
Query: 235 PHPHECPYCFRVFASGQALGGHKRSQLCSXXXXXXSGDDIPAMIKSNGFIDLNLPAPF-D 293
HECP+CFRVF SGQALGGHKR+ + S +S+G IDLN+PA D
Sbjct: 286 ---HECPFCFRVFDSGQALGGHKRAHMPSGGARPSPSPSPAKCGESSGSIDLNMPATMED 342
Query: 294 DVELSAVSDPFLSS 307
D ELSAV D +S
Sbjct: 343 DFELSAVYDAEFAS 356
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,953,907
Number of extensions: 314729
Number of successful extensions: 1164
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1151
Number of HSP's successfully gapped: 6
Length of query: 311
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 210
Effective length of database: 11,762,187
Effective search space: 2470059270
Effective search space used: 2470059270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)