FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0659500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.12 (0.044) R2 : 0.27
β1 : 1.13 (0.166) R2dD : 0.0827 R2D : 0.132
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.15 (0.128) R2dE : 0.142 R2E : 0.182
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0814 (0.0961) R2dN8 : 0.00163 R2N8 : 0.000148
σ : 0.818
deviance : 308.68
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 28.41
memory length : 1700
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
292.81 0.804 4.38 -1.72 0.25 2.92 1.03 -16.7 0.301 15.9 30.4 1517 -- --
310.22 0.82 4.12 1.01 0.437 1.06 0.000511 -- -0.04 17.3 28.3 1421 -- --
295.75 0.801 4.38 -1.74 0.245 3.03 -- -17.4 0.306 15.9 30.36 1549 -- --
308.1 0.818 4.13 1.12 0.288 1.02 -- -- -0.0966 16.9 28.3 1420 -- --
298.72 0.805 4.38 -1.75 -- 3.11 -- -17.9 0.299 -- 30.33 1580 -- --
357.57 0.886 4.08 1.51 0.209 -- 1.01 -- 0.122 16.5 -- -- -- --
360.19 0.889 4.08 1.52 0.223 -- -- -- 0.128 17.2 -- -- -- --
308.68 0.818 4.12 1.13 -- 1.15 -- -- -0.0814 -- 28.41 1700 -- --
339.17 0.858 4.14 -- 0.13 1.33 -- -- -0.208 16.5 27.4 1689 -- --
362.79 0.89 4.08 1.51 -- -- -- -- 0.122 -- -- -- -- --
420.88 0.96 4.12 -- 0.197 -- -- -- -0.0414 17.5 -- -- -- --
338.3 0.857 4.18 -- -- 1.39 -- -- -0.326 -- 27.4 1689 -- --
422.9 0.96 4.11 -- -- -- -- -- -0.0455 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 295.16 temperature 30 1440 > th dose independent rect. 11 7
3 295.26 temperature 30 1440 > th dose independent rect. 14 23
5 295.39 temperature 30 1440 < th dose independent rect. 14 23
21 295.56 temperature 30 1440 < th dose independent rect. 11 7
25 295.75 temperature 30 1440 < th dose independent rect. 2 16
27 295.76 temperature 30 1440 < th dose independent rect. 5 13
31 295.77 temperature 30 1440 < th dose independent rect. 19 23
35 295.80 temperature 30 1440 < th dose independent rect. 22 20
54 295.84 temperature 30 1440 > th dose independent sin 20 NA
108 296.05 temperature 30 1440 < th dose independent rect. 11 17
110 296.07 temperature 30 1440 < th dose independent rect. 11 22
111 296.08 temperature 30 1440 < th dose independent sin 20 NA
115 296.11 temperature 30 1440 < th dose independent rect. 11 10
116 296.11 temperature 30 1440 < th dose independent rect. 11 12
120 296.13 temperature 30 1440 > th dose independent no NA NA
240 296.22 temperature 30 1440 > th dose independent rect. 15 3
245 296.26 temperature 30 1440 < th dose independent rect. 5 23
267 296.32 temperature 30 1440 < th dose independent rect. 5 16
269 296.32 temperature 30 1440 < th dose independent rect. 2 19
318 296.37 temperature 30 1440 < th dose independent no NA NA
346 296.40 temperature 30 1440 > th dose independent rect. 16 1
365 296.46 temperature 30 1440 < th dose independent rect. 16 1
418 297.00 temperature 30 1440 < th dose independent rect. 15 3
423 297.10 temperature 30 1440 > th dose dependent rect. 14 1
455 297.50 temperature 10 1440 > th dose dependent rect. 16 6
457 297.50 temperature 30 1440 < th dose dependent rect. 16 6
551 298.04 temperature 10 1440 > th dose dependent rect. 18 2
575 298.13 temperature 30 1440 < th dose dependent rect. 18 3
731 299.46 temperature 20 1440 > th dose dependent sin 16 NA
775 299.66 temperature 20 1440 > th dose dependent rect. 13 19
787 299.76 temperature 20 1440 > th dose dependent rect. 15 18
793 299.78 temperature 20 1440 > th dose dependent rect. 13 13
794 299.78 temperature 10 30 > th dose dependent rect. 3 23
840 300.03 temperature 10 1440 > th dose dependent sin 17 NA
883 300.23 temperature 20 1440 > th dose dependent rect. 16 22
941 300.39 temperature 20 1440 > th dose dependent rect. 1 22
953 300.46 temperature 30 1440 < th dose dependent sin 18 NA
956 300.46 temperature 20 1440 > th dose dependent rect. 3 23
960 300.48 temperature 20 1440 > th dose dependent no NA NA