BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0659500 Os02g0659500|AK064694
(341 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G60580.1 | chr3:22394007-22394873 FORWARD LENGTH=289 92 4e-19
AT1G02030.1 | chr1:355385-356188 REVERSE LENGTH=268 91 9e-19
AT2G45120.1 | chr2:18603680-18604624 FORWARD LENGTH=315 87 1e-17
AT4G35280.1 | chr4:16787429-16788283 REVERSE LENGTH=285 70 1e-12
AT2G17180.1 | chr2:7476835-7477647 REVERSE LENGTH=271 67 1e-11
AT1G02040.1 | chr1:358104-359078 REVERSE LENGTH=325 65 8e-11
AT5G03510.1 | chr5:880353-881231 FORWARD LENGTH=293 59 4e-09
AT3G53600.1 | chr3:19875532-19876059 FORWARD LENGTH=176 59 5e-09
AT2G28710.1 | chr2:12322974-12323444 FORWARD LENGTH=157 57 2e-08
AT1G26610.1 | chr1:9193735-9195102 FORWARD LENGTH=456 56 3e-08
AT5G43170.1 | chr5:17331050-17331631 REVERSE LENGTH=194 55 7e-08
AT1G49900.1 | chr1:18474108-18477643 REVERSE LENGTH=918 54 1e-07
AT1G26590.1 | chr1:9189624-9190709 FORWARD LENGTH=362 50 1e-06
>AT3G60580.1 | chr3:22394007-22394873 FORWARD LENGTH=289
Length = 288
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 78/201 (38%), Gaps = 26/201 (12%)
Query: 129 EPMSSLSYAGTPEEEVALALMMLSRDTWPSVERXXXXXXXXXXXXXXXXXXXXXXXXXXX 188
EP S + T EE++A LMMLSRD W
Sbjct: 112 EPPHSSASDTTTEEDLAFCLMMLSRDKWK--------KNKSNKEVVEEIETEEESEGYNK 163
Query: 189 XXXXEKRTRFQCPACKKVFRSYQALGGHRASHVRGGRGGCCXXXXXXXXXXXXXXXXXEH 248
+ R++C C KVF+SYQALGGHRASH + E+
Sbjct: 164 INRATTKGRYKCETCGKVFKSYQALGGHRASHKKN----------RVSNNKTEQRSETEY 213
Query: 249 DAGEEDMDGKAPPHECPYCYRVFASGQALGGHKKSHVCSXXXXXXXXXXXXXXXXXXXXK 308
D + HECP C RVFASGQALGGHK+SH
Sbjct: 214 D---NVVVVAKRIHECPICLRVFASGQALGGHKRSHGVGNLSVNQQRRVHRNESVKQR-- 268
Query: 309 ILGMIDLNFAPPVDEVELSAV 329
MIDLN P +E E+S V
Sbjct: 269 ---MIDLNLPAPTEEDEVSVV 286
>AT1G02030.1 | chr1:355385-356188 REVERSE LENGTH=268
Length = 267
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 88/201 (43%), Gaps = 50/201 (24%)
Query: 129 EPMSSLSYAGTPEEEVALALMMLSRDTWPSVERXXXXXXXXXXXXXXXXXXXXXXXXXXX 188
EPMSS+S A T EE+VAL+LM+LSRD
Sbjct: 113 EPMSSVSDAATTEEDVALSLMLLSRDK-----------------------WEKEEEESDE 149
Query: 189 XXXXEKRTR-FQCPACKKVFRSYQALGGHRASHVRGGRGGCCXXXXXXXXXXXXXXXXXE 247
+KR + F+C C+KVF+SYQALGGHRASH +
Sbjct: 150 ERWKKKRNKWFECETCEKVFKSYQALGGHRASHKK---------------KIAETDQLGS 194
Query: 248 HDAGEEDMDGKAPPHECPYCYRVFASGQALGGHKKSHVCSXXXXXXXXXXXXXXXXXXXX 307
+ ++ + HECP C +VF SGQALGGHK+SH +
Sbjct: 195 DELKKKKKKSTSSHHECPICAKVFTSGQALGGHKRSHASANNEFTRRSGI---------- 244
Query: 308 KILGMIDLNFAPPVDEVELSA 328
I+ +IDLN P +E E+++
Sbjct: 245 -IISLIDLNLPAPSEEEEMAS 264
>AT2G45120.1 | chr2:18603680-18604624 FORWARD LENGTH=315
Length = 314
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 77/193 (39%), Gaps = 26/193 (13%)
Query: 139 TPEEEVALALMMLSRDTWPSVERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKRTRF 198
T EE++A L+MLSRD W + R RF
Sbjct: 146 TTEEDLAFCLIMLSRDKWKQ-----------QKKKKQRVEEDETDHDSEDYKSSKSRGRF 194
Query: 199 QCPACKKVFRSYQALGGHRASHVRGGRGGCCXXXXXXXXXXXXXXXXXEHDAGEEDMDGK 258
+C C KVF+SYQALGGHRASH + E+ G ++
Sbjct: 195 KCETCGKVFKSYQALGGHRASHKKN-----------KACMTKTEQVETEYVLGVKE---- 239
Query: 259 APPHECPYCYRVFASGQALGGHKKSHVCSXXXXXXXXXXXXXXXXXXXXKILGMIDLNFA 318
HECP C+RVF SGQALGGHK+SH + MIDLN
Sbjct: 240 KKVHECPICFRVFTSGQALGGHKRSHGSNIGAGRGLSVSQIVQIEEEVSVKQRMIDLNLP 299
Query: 319 PPVDEVELSAVSD 331
P +E E S V D
Sbjct: 300 APNEEDETSLVFD 312
>AT4G35280.1 | chr4:16787429-16788283 REVERSE LENGTH=285
Length = 284
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 58/134 (43%), Gaps = 20/134 (14%)
Query: 197 RFQCPACKKVFRSYQALGGHRASHVRGGRGGCCXXXXXXXXXXXXXXXXXEHDAGEEDMD 256
RF+C CKKVF S+QALGGHRASH + +G +H
Sbjct: 161 RFECGGCKKVFGSHQALGGHRASH-KNVKGCFAITNVTDDPMTVSTSSGHDHQGKILTFS 219
Query: 257 GKAPPHECPYCYRVFASGQALGGHKKSHVCSXXXXXXXXXXXXXXXXXXXXKILGMIDLN 316
G H+C C+RVF+SGQALGGH + H I G +DLN
Sbjct: 220 GH---HKCNICFRVFSSGQALGGHMRCH----------------WEKEEEPMISGALDLN 260
Query: 317 FAPPVDEVELSAVS 330
P + ++ S S
Sbjct: 261 VPPTIQDLSTSDTS 274
>AT2G17180.1 | chr2:7476835-7477647 REVERSE LENGTH=271
Length = 270
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 193 EKRTRFQCPACKKVFRSYQALGGHRASHVRGGRGGCCXXXXXXXXXXXXXXXXXEHDAGE 252
E RF+C CKKVF S+QALGGHRA+H + +G + D G+
Sbjct: 143 EVEERFECDGCKKVFGSHQALGGHRATH-KDVKGCFANKNITEDPPPPPPQEIVDQDKGK 201
Query: 253 EDMDGKAPPHECPYCYRVFASGQALGGHKKSH 284
H C C RVF+SGQALGGH + H
Sbjct: 202 SVKLVSGMNHRCNICSRVFSSGQALGGHMRCH 233
>AT1G02040.1 | chr1:358104-359078 REVERSE LENGTH=325
Length = 324
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 52/100 (52%), Gaps = 15/100 (15%)
Query: 198 FQCPACKKVFRSYQALGGHRASHVRGGRGGCCXXXXXXXXXXXXXXXXXEHDAGEEDMDG 257
FQC ACKKVF S+QALGGHRASH + GC + + +ED +
Sbjct: 150 FQCKACKKVFTSHQALGGHRASHKK--VKGCFASQDKEEEEEEEYKEDDDDNDEDEDEEE 207
Query: 258 -------------KAPPHECPYCYRVFASGQALGGHKKSH 284
++ HEC C+RVF+SGQALGGHK+ H
Sbjct: 208 DEEDKSTAHIARKRSNAHECTICHRVFSSGQALGGHKRCH 247
>AT5G03510.1 | chr5:880353-881231 FORWARD LENGTH=293
Length = 292
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 198 FQCPACKKVFRSYQALGGHRASHVRGGRGGCCXXXXXXXXXXXXXXXXXEHDAGEEDM-- 255
+QC C K F S+QALGGHRASH + G E A +
Sbjct: 118 YQCKTCDKSFHSFQALGGHRASHKKPKLGASVFKCVEKKTASASTVETVEAGAVGSFLSL 177
Query: 256 -----DGKAPP---HECPYCYRVFASGQALGGHKKSH 284
DG P HEC C F+SGQALGGH + H
Sbjct: 178 QVTSSDGSKKPEKTHECSICKAEFSSGQALGGHMRRH 214
>AT3G53600.1 | chr3:19875532-19876059 FORWARD LENGTH=176
Length = 175
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 20/87 (22%)
Query: 198 FQCPACKKVFRSYQALGGHRASHVRGGRGGCCXXXXXXXXXXXXXXXXXEHDAGEEDMDG 257
F+C C + F S+QALGGHRASH + +H E DM
Sbjct: 49 FECKTCNRKFDSFQALGGHRASHKK--------------PKLIVDQEQVKHRNKENDM-- 92
Query: 258 KAPPHECPYCYRVFASGQALGGHKKSH 284
H+C C ++F +GQALGGH + H
Sbjct: 93 ----HKCTICDQMFGTGQALGGHMRKH 115
>AT2G28710.1 | chr2:12322974-12323444 FORWARD LENGTH=157
Length = 156
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 40/96 (41%), Gaps = 38/96 (39%)
Query: 198 FQCPACKKVFRSYQALGGHRASHVRGGRGGCCXXXXXXXXXXXXXXXXXEHDAGEEDMDG 257
F C C K F S+QALGGHRASH R ++G
Sbjct: 34 FACKTCNKEFPSFQALGGHRASHRRSA-----------------------------ALEG 64
Query: 258 KAPP---------HECPYCYRVFASGQALGGHKKSH 284
APP HECP C FA GQALGGH + H
Sbjct: 65 HAPPSPKRVKPVKHECPICGAEFAVGQALGGHMRKH 100
>AT1G26610.1 | chr1:9193735-9195102 FORWARD LENGTH=456
Length = 455
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 258 KAPPHECPYCYRVFASGQALGGHKKSHVCSXXXXXXXXXXXXXXXXXXXXKILGMIDLNF 317
K+ HECP C+RVF SGQALGGHK+SH ++ +IDLN
Sbjct: 395 KSKGHECPICFRVFKSGQALGGHKRSHFIG-----NQEHRTLVIQHQVAHEMHTLIDLNL 449
Query: 318 APPVDE 323
P+DE
Sbjct: 450 PAPIDE 455
>AT5G43170.1 | chr5:17331050-17331631 REVERSE LENGTH=194
Length = 193
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 44/93 (47%), Gaps = 33/93 (35%)
Query: 198 FQCPACKKVFRSYQALGGHRASHVRGGRGGCCXXXXXXXXXXXXXXXXXEHDAGEEDMDG 257
++C C K F SYQALGGH+ASH R GG GE D
Sbjct: 75 YKCGVCYKTFSSYQALGGHKASH-RSLYGG-----------------------GEND--- 107
Query: 258 KAPP------HECPYCYRVFASGQALGGHKKSH 284
K+ P H C C + FA+GQALGGHK+ H
Sbjct: 108 KSTPSTAVKSHVCSVCGKSFATGQALGGHKRCH 140
>AT1G49900.1 | chr1:18474108-18477643 REVERSE LENGTH=918
Length = 917
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 24/95 (25%)
Query: 194 KRTRFQCPACKKVFRSYQALGGHRASHVRGGRGGCCXXXXXXXXXXXXXXXXXEHDAGEE 253
K +QC C + SYQALGGH+ASH E+ GE+
Sbjct: 746 KSDSYQCNVCGRELPSYQALGGHKASH--------------------RTKPPVENATGEK 785
Query: 254 DMDGKAPP----HECPYCYRVFASGQALGGHKKSH 284
K P H+C C+R F++GQ+LGGHK+ H
Sbjct: 786 MRPKKLAPSGKIHKCSICHREFSTGQSLGGHKRLH 820
>AT1G26590.1 | chr1:9189624-9190709 FORWARD LENGTH=362
Length = 361
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 258 KAPPHECPYCYRVFASGQALGGHKKSH 284
K+ HECP C+R+F SGQALGGHK+SH
Sbjct: 311 KSKGHECPICFRMFKSGQALGGHKRSH 337
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,095,109
Number of extensions: 138541
Number of successful extensions: 650
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 629
Number of HSP's successfully gapped: 14
Length of query: 341
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 242
Effective length of database: 8,392,385
Effective search space: 2030957170
Effective search space used: 2030957170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)