BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0659500 Os02g0659500|AK064694
         (341 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0659500  Zinc finger, C2H2-type domain containing protein    400   e-112
Os04g0552700  Zinc finger, C2H2-type domain containing protein    223   2e-58

>Os02g0659500 Zinc finger, C2H2-type domain containing protein
          Length = 341

 Score =  400 bits (1027), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/341 (63%), Positives = 217/341 (63%)

Query: 1   MAKNACKLCYRRFASPRALAGHMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAKNACKLCYRRFASPRALAGHMR                                    
Sbjct: 1   MAKNACKLCYRRFASPRALAGHMRSHSVAAANAAAAAAAAAAAKLQISSASSASTSFTAA 60

Query: 61  XXXXXXXXXXXDVGFKKPLSIYALRENPKRSLRVSEYAFSDRESEAESTPTPAAKGLRAX 120
                      DVGFKKPLSIYALRENPKRSLRVSEYAFSDRESEAESTPTPAAKGLRA 
Sbjct: 61  DEEEEEEEEEEDVGFKKPLSIYALRENPKRSLRVSEYAFSDRESEAESTPTPAAKGLRAG 120

Query: 121 XXXXXXXXEPMSSLSYAGTPEEEVALALMMLSRDTWPSVERXXXXXXXXXXXXXXXXXXX 180
                   EPMSSLSYAGTPEEEVALALMMLSRDTWPSVER                   
Sbjct: 121 GGGGGGDGEPMSSLSYAGTPEEEVALALMMLSRDTWPSVERGGGGGEYSDDGSDDGYALP 180

Query: 181 XXXXXXXXXXXXEKRTRFQCPACKKVFRSYQALGGHRASHVRGGRGGCCXXXXXXXXXXX 240
                       EKRTRFQCPACKKVFRSYQALGGHRASHVRGGRGGCC           
Sbjct: 181 PPSPAPAPAPVPEKRTRFQCPACKKVFRSYQALGGHRASHVRGGRGGCCAPPVAPPPQPH 240

Query: 241 XXXXXXEHDAGEEDMDGKAPPHECPYCYRVFASGQALGGHKKSHVCSXXXXXXXXXXXXX 300
                 EHDAGEEDMDGKAPPHECPYCYRVFASGQALGGHKKSHVCS             
Sbjct: 241 PQPPLPEHDAGEEDMDGKAPPHECPYCYRVFASGQALGGHKKSHVCSAAAAAAHAQTPGG 300

Query: 301 XXXXXXXKILGMIDLNFAPPVDEVELSAVSDPHFPSNPPGP 341
                  KILGMIDLNFAPPVDEVELSAVSDPHFPSNPPGP
Sbjct: 301 GAPPPQPKILGMIDLNFAPPVDEVELSAVSDPHFPSNPPGP 341



>Os04g0552700 Zinc finger, C2H2-type domain containing protein
          Length = 311

 Score =  223 bits (567), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 148/339 (43%), Positives = 167/339 (49%), Gaps = 31/339 (9%)

Query: 1   MAKNACKLCYRRFASPRALAGHMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAKN CKLCYRRF +PRALAGHMR                                    
Sbjct: 1   MAKNTCKLCYRRFGNPRALAGHMRSHSVAASRSQISSTSSASTSVAVGDDDGGGDA---- 56

Query: 61  XXXXXXXXXXXDVGFKKPLSIYALRENPKRSLRVSEYAFSDRESEAESTPTPAAKGLRAX 120
                          K+P+  Y LRE PKR +R++E  FSDRESE E   +P   G RA 
Sbjct: 57  ---------------KRPIQGYVLREKPKRRVRLAESDFSDRESETEYYSSPP-HGKRAN 100

Query: 121 XXXXXXXXEPMSSLSYAGTPEEEVALALMMLSRDTWPSVERXXXXXXXXXXXXXXXXXXX 180
                   E +SS+S A T EE+VAL+LMMLSRDTWP+                      
Sbjct: 101 TGSGDV--EQVSSVSDA-TSEEDVALSLMMLSRDTWPATP-PPPPPYRLRGAGYDDGSDG 156

Query: 181 XXXXXXXXXXXXEKRTRFQCPACKKVFRSYQALGGHRASHVRGGRGGCCXXXXXXXXXXX 240
                       +KRTRFQCPACKKVFRSYQALGGHRASH+RGGRGGCC           
Sbjct: 157 GDAPPAPAAAAAQKRTRFQCPACKKVFRSYQALGGHRASHMRGGRGGCCAPPPNPPPSPA 216

Query: 241 XXXX-XXEHDAGEEDMDGKAPPHECPYCYRVFASGQALGGHKKSHVCSXXXXXXXXXXXX 299
                  E D GEE+   K  PHECPYC+RVFASGQALGGHK+S +CS            
Sbjct: 217 TPLQPLPECDGGEEE-GAKPHPHECPYCFRVFASGQALGGHKRSQLCS-----AAAAAAS 270

Query: 300 XXXXXXXXKILGMIDLNFAPPVDEVELSAVSDPHFPSNP 338
                   K  G IDLN   P D+VELSAVSDP   S P
Sbjct: 271 GDDIPAMIKSNGFIDLNLPAPFDDVELSAVSDPFLSSKP 309



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,679,931
Number of extensions: 251834
Number of successful extensions: 975
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 974
Number of HSP's successfully gapped: 4
Length of query: 341
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 239
Effective length of database: 11,709,973
Effective search space: 2798683547
Effective search space used: 2798683547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)