Os04g0552700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os04g0552700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 323.59 | 0.845 | 4.83 | 6.86 | 2.5 | -2.88 | 1.75 | 2.92 | 1.5 | 0.437 | 24.86 | 1520 | -- | -- |
| 327.97 | 0.843 | 4.93 | 6.13 | 2.47 | -2.6 | 2.01 | -- | 1.29 | 0.307 | 24.75 | 1556 | -- | -- |
| 336.36 | 0.854 | 4.83 | 6.82 | 2.47 | -2.95 | -- | 3.02 | 1.52 | 0.333 | 24.62 | 1558 | -- | -- |
| 340.46 | 0.859 | 4.93 | 5.97 | 2.47 | -2.66 | -- | -- | 1.31 | 0.369 | 24.66 | 1563 | -- | -- |
| 572.07 | 1.12 | 4.86 | 5.85 | -- | -4.02 | -- | 1.16 | 1.41 | -- | 24.32 | 1636 | -- | -- |
| 596.69 | 1.15 | 5.01 | 5.13 | 2.38 | -- | 1.54 | -- | 0.942 | 0.421 | -- | -- | -- | -- |
| 606.93 | 1.15 | 5.01 | 5.07 | 2.38 | -- | -- | -- | 0.935 | 0.411 | -- | -- | -- | -- |
| 572.79 | 1.12 | 4.88 | 5.71 | -- | -3.94 | -- | -- | 1.37 | -- | 24.32 | 1636 | -- | -- |
| 1196.67 | 1.61 | 5.18 | -- | 2.52 | -1.56 | -- | -- | 0.204 | 0.454 | 28.34 | 1640 | -- | -- |
| 961.33 | 1.45 | 4.97 | 5.15 | -- | -- | -- | -- | 0.973 | -- | -- | -- | -- | -- |
| 1283.48 | 1.68 | 5.14 | -- | 2.45 | -- | -- | -- | 0.371 | 0.516 | -- | -- | -- | -- |
| 1414.11 | 1.76 | 5.04 | -- | -- | -3.1 | -- | -- | 0.664 | -- | 24.32 | 1636 | -- | -- |
| 1660.21 | 1.9 | 5.1 | -- | -- | -- | -- | -- | 0.402 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 314.73 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 2 | 314.75 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 3 | 314.75 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 4 | 319.32 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 5 | 319.69 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 9 | 322.80 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 10 | 323.28 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 8 | 13 |
| 22 | 323.96 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 22 | NA |
| 26 | 324.08 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 8 | 20 |
| 32 | 324.17 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 109 | 325.07 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 123 | 325.33 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 152 | 325.48 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 242 | 328.59 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 283 | 330.33 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 291 | 331.09 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 308 | 331.93 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 353 | 334.29 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 394 | 335.88 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 397 | 335.90 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 493 | 339.44 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 494 | 339.44 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 508 | 339.97 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 519 | 340.40 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 558 | 341.62 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 613 | 343.27 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 616 | 343.44 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 629 | 343.93 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 630 | 343.95 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 661 | 344.57 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 742 | 346.21 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 772 | 346.66 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 828 | 347.51 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 835 | 347.64 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 838 | 347.65 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 866 | 347.97 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 891 | 348.19 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 904 | 348.38 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 997 | 349.25 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |