BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0551600 Os04g0551600|AK064637
         (124 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0551600  Zinc finger, FYVE/PHD-type domain containing p...   144   1e-35
Os02g0658200  Zinc finger, FYVE/PHD-type domain containing p...    78   2e-15

>Os04g0551600 Zinc finger, FYVE/PHD-type domain containing protein
          Length = 124

 Score =  144 bits (363), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/124 (62%), Positives = 78/124 (62%)

Query: 1   MAGAGTVCSMCGDVGFPDKLFQCARCRYRFQHSYCTNXXXXXXXXXXXXXMCDWCLSDVA 60
           MAGAGTVCSMCGDVGFPDKLFQCARCRYRFQHSYCTN             MCDWCLSDVA
Sbjct: 1   MAGAGTVCSMCGDVGFPDKLFQCARCRYRFQHSYCTNYYGDAAPAPAGADMCDWCLSDVA 60

Query: 61  GKARYSSAAGKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGTKAAGRRYKLLK 120
           GKARYSSAAGKQ                                 RRGTKAAGRRYKLLK
Sbjct: 61  GKARYSSAAGKQQGAGSQESSTTTSSSSAGRGGGGKPGAGEQESGRRGTKAAGRRYKLLK 120

Query: 121 DVLC 124
           DVLC
Sbjct: 121 DVLC 124



>Os02g0658200 Zinc finger, FYVE/PHD-type domain containing protein
          Length = 125

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/128 (48%), Positives = 67/128 (52%), Gaps = 9/128 (7%)

Query: 1   MAGAGTVCSMCGDVGFPDKLFQCARCRYRFQHSYCTNXXXXXXXXXXXXXMCDWCLSD-- 58
           MA  GTVCSMCGDVGFPDKLF+CARCR RFQHSYCTN             +CDWCLSD  
Sbjct: 3   MASGGTVCSMCGDVGFPDKLFRCARCRRRFQHSYCTNYYGDGAPVEAGAGVCDWCLSDAA 62

Query: 59  -VAGKARYSSAAGKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGTKA-AGRRY 116
            VAGK   SS   ++                                 RR +KA A RRY
Sbjct: 63  VVAGKKGPSSEGNEE-----PFSREYRGRSKQAASTGGGEQEGGGGGGRRVSKAGAVRRY 117

Query: 117 KLLKDVLC 124
           KLLKDVLC
Sbjct: 118 KLLKDVLC 125



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.137    0.473 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,774,784
Number of extensions: 59261
Number of successful extensions: 119
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 3
Length of query: 124
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 36
Effective length of database: 12,440,969
Effective search space: 447874884
Effective search space used: 447874884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)