FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0658200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, FYVE/PHD-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.22 (0.0365) R2 : 0.898
β1 : -- (--) R2dD : -- R2D : --
β2 : 5.03 (0.0883) R2dC : 0.743 R2C : 0.802
β3 : -2.97 (0.146) R2dE : 0.0951 R2E : 0.155
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.19 (0.077) R2dN8 : 0.00178 R2N8 : -0.00355
σ : 0.685
deviance : 216.11
__
_____
C
peak time of C : 10.7
E
wheather : radiation
threshold : 4.473
memory length : 60
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 20.1
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
215.27 0.689 5.22 0.038 5.03 -2.97 -0.456 -0.077 -0.188 10.7 4.588 60 20.2 --
215.26 0.683 5.22 0.0374 5.03 -2.96 -0.458 -- -0.184 10.7 4.499 60 20.1 --
216.1 0.685 5.22 0.0256 5.03 -2.97 -- 0.0275 -0.189 10.7 4.495 60 20.1 --
216.1 0.685 5.22 0.0186 5.03 -2.97 -- -- -0.189 10.7 4.491 60 20.1 --
360.92 0.89 5.33 -0.0554 -- -4.93 -- 0.454 -0.118 -- 22.15 9 6.47 --
350.12 0.877 5.2 -0.000824 5.29 -- -0.376 -- -0.041 11.5 -- -- -- --
350.73 0.877 5.2 -0.016 5.29 -- -- -- -0.0425 11.5 -- -- -- --
344.58 0.865 5.32 -0.0308 -- -5.15 -- -- -0.0752 -- 69.87 2 6.54 --
216.11 0.685 5.22 -- 5.03 -2.97 -- -- -0.19 10.7 4.473 60 20.1 --
2108.05 2.15 5.33 -0.157 -- -- -- -- -0.0983 -- -- -- -- --
350.74 0.876 5.2 -- 5.29 -- -- -- -0.0407 11.5 -- -- -- --
344.6 0.865 5.32 -- -- -5.15 -- -- -0.0717 -- 70.05 2 6.54 --
2108.7 2.14 5.32 -- -- -- -- -- -0.0809 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 228.85 radiation 10.0 30 < th dose dependent sin 3 NA
2 228.91 radiation 1.0 90 > th dose independent sin 2 NA
3 229.02 radiation 1.0 90 < th dose independent sin 2 NA
7 233.15 radiation 10.0 90 < th dose dependent rect. 1 16
11 236.90 radiation 1.0 90 < th dose independent rect. 1 18
69 249.28 humidity 80.0 10 > th dose dependent rect. 2 16
95 251.04 radiation 10.0 30 < th dose dependent rect. 10 22
103 251.21 radiation 1.0 270 < th dose independent rect. 22 21
127 252.05 humidity 80.0 10 > th dose dependent rect. 2 14
167 254.09 radiation 20.0 10 < th dose dependent rect. 13 17
201 255.41 radiation 10.0 30 < th dose dependent no NA NA
203 255.45 radiation 10.0 30 < th dose dependent rect. 15 23
274 257.36 radiation 10.0 10 < th dose dependent rect. 7 23
428 261.46 radiation 10.0 30 < th dose dependent rect. 17 23
450 262.06 humidity 80.0 10 > th dose dependent sin 3 NA
511 263.44 humidity 80.0 10 > th dose independent rect. 1 17
520 263.61 precipitation 0.1 270 < th dose independent rect. 3 22
521 263.61 precipitation 0.1 270 < th dose dependent rect. 3 22
526 263.74 precipitation 0.1 270 < th dose independent rect. 4 20
527 263.74 precipitation 0.1 270 < th dose dependent rect. 4 20
566 264.59 radiation 1.0 90 > th dose independent rect. 4 11
608 265.20 radiation 1.0 90 > th dose independent rect. 18 22
651 265.65 humidity 80.0 270 > th dose independent rect. 24 4
660 265.83 atmosphere 1015.0 270 < th dose independent rect. 24 4
663 265.85 temperature 10.0 270 > th dose independent rect. 24 4
665 265.85 temperature 30.0 270 < th dose independent rect. 24 4
666 265.85 humidity 50.0 270 > th dose independent rect. 24 4
669 265.85 atmosphere 995.0 270 > th dose independent rect. 24 4
676 265.85 temperature 10.0 270 > th dose independent rect. 4 20
688 265.90 wind 9.0 270 < th dose independent rect. 24 4
713 266.24 temperature 15.0 90 > th dose independent rect. 6 19
746 266.79 radiation 10.0 10 < th dose dependent rect. 24 23
750 266.85 radiation 10.0 30 < th dose dependent rect. 21 23
774 267.25 precipitation 0.1 90 < th dose independent rect. 6 19
775 267.25 precipitation 0.1 90 < th dose dependent rect. 6 19
785 267.39 wind 9.0 270 < th dose independent rect. 4 20
795 267.46 humidity 50.0 270 > th dose dependent rect. 24 4
820 267.82 temperature 10.0 270 > th dose independent rect. 1 2
822 267.82 temperature 30.0 270 < th dose independent rect. 1 2
823 267.82 humidity 50.0 270 > th dose independent rect. 1 2
826 267.82 atmosphere 995.0 270 > th dose independent rect. 1 2
827 267.82 atmosphere 1010.0 270 < th dose independent rect. 1 2
829 267.82 radiation 1.0 270 < th dose independent rect. 1 2
834 267.82 temperature 10.0 270 > th dose independent rect. 3 22
835 267.82 radiation 1.0 270 < th dose dependent rect. 1 2
843 267.91 wind 9.0 270 < th dose independent rect. 1 2
848 268.01 precipitation 0.1 270 < th dose independent rect. 24 4
849 268.01 precipitation 0.1 270 < th dose dependent rect. 24 4
861 268.14 precipitation 0.1 270 < th dose independent rect. 1 2
862 268.14 precipitation 0.1 270 < th dose dependent rect. 1 2
898 268.56 precipitation 0.1 270 < th dose independent rect. 19 14
900 268.56 precipitation 0.1 270 < th dose dependent rect. 19 14
988 269.44 humidity 50.0 270 > th dose dependent rect. 1 2
1000 269.65 temperature 10.0 270 > th dose dependent rect. 24 4