BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0658200 Os02g0658200|AK121046
         (125 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0658200  Zinc finger, FYVE/PHD-type domain containing p...   202   7e-53
Os04g0551600  Zinc finger, FYVE/PHD-type domain containing p...   105   6e-24

>Os02g0658200 Zinc finger, FYVE/PHD-type domain containing protein
          Length = 125

 Score =  202 bits (513), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 113/125 (90%), Positives = 113/125 (90%)

Query: 1   MAMASGGTVCSMCGDVGFPDKLFRCARCRRRFQHSYCTNYYGDGAPVEAGAGVCDWCLSD 60
           MAMASGGTVCSMCGDVGFPDKLFRCARCRRRFQHSYCTNYYGDGAPVEAGAGVCDWCLSD
Sbjct: 1   MAMASGGTVCSMCGDVGFPDKLFRCARCRRRFQHSYCTNYYGDGAPVEAGAGVCDWCLSD 60

Query: 61  AAVVAGKKGPSSEGNEEPFSREYRGRSKQAASTXXXXXXXXXXXXRRVSKAGAVRRYKLL 120
           AAVVAGKKGPSSEGNEEPFSREYRGRSKQAAST            RRVSKAGAVRRYKLL
Sbjct: 61  AAVVAGKKGPSSEGNEEPFSREYRGRSKQAASTGGGEQEGGGGGGRRVSKAGAVRRYKLL 120

Query: 121 KDVLC 125
           KDVLC
Sbjct: 121 KDVLC 125



>Os04g0551600 Zinc finger, FYVE/PHD-type domain containing protein
          Length = 124

 Score =  105 bits (263), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/128 (57%), Positives = 78/128 (60%), Gaps = 9/128 (7%)

Query: 3   MASGGTVCSMCGDVGFPDKLFRCARCRRRFQHSYCTNYYGDGAPVEAGAGVCDWCLSDAA 62
           MA  GTVCSMCGDVGFPDKLF+CARCR RFQHSYCTNYYGD AP  AGA +CDWCLSD  
Sbjct: 1   MAGAGTVCSMCGDVGFPDKLFQCARCRYRFQHSYCTNYYGDAAPAPAGADMCDWCLSD-- 58

Query: 63  VVAGKKGPSS-----EGNEEPFSREYRGRSKQAASTXXXXXXXXXXXXRRVSKAGAVRRY 117
            VAGK   SS     +G     S      S                  RR +KA A RRY
Sbjct: 59  -VAGKARYSSAAGKQQGAGSQESSTTTSSSSAGRGGGGKPGAGEQESGRRGTKA-AGRRY 116

Query: 118 KLLKDVLC 125
           KLLKDVLC
Sbjct: 117 KLLKDVLC 124



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.135    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,485,738
Number of extensions: 190944
Number of successful extensions: 378
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 4
Length of query: 125
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 37
Effective length of database: 12,440,969
Effective search space: 460315853
Effective search space used: 460315853
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)