Os04g0551600 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0551600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, FYVE/PHD-type domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.4	(0.0348)	R²	:	0.295
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	1.58	(0.123)	R²_dC	:	0.479	R²_C	:	-0.0458
β₃	:	1.8	(0.181)	R²_dE	:	0.286	R²_E	:	-0.22
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.378	(0.073)	R²_dN8	:	0.0536	R²_N8	:	0.0346
σ	:	0.652
deviance	:	195.78
__

_____

C
peak time of C	:	19.4
E
wheather	:	radiation
threshold	:	2.032
memory length	:	369
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	sin
peak or start time of G	:	20.1
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
189.98	0.648	5.4	-0.115	1.51	1.63	1.3	-0.252	0.358	19.4	1.627	366	20.1	--
189.87	0.642	5.4	-0.13	1.53	1.74	1.37	--	0.356	19.5	2.031	367	20.1	--
192.4	0.646	5.39	-0.177	1.55	1.68	--	-1.16	0.415	19.6	2.718	367	20.4	--
195.15	0.651	5.4	-0.163	1.53	1.75	--	--	0.361	19.4	2.13	367	20.1	--
221.09	0.693	5.45	-0.298	--	-1.08	--	-2.12	0.204	--	0.2807	841	0.713	--
221.95	0.698	5.39	-0.285	0.793	--	1.39	--	0.329	21.1	--	--	--	--
228.68	0.708	5.39	-0.333	0.789	--	--	--	0.328	21.1	--	--	--	--
226.67	0.701	5.37	-0.288	--	-0.989	--	--	0.304	--	9.963	845	2.46	--
195.78	0.652	5.4	--	1.58	1.8	--	--	0.378	19.4	2.032	369	20.1	--
264.5	0.76	5.37	-0.332	--	--	--	--	0.324	--	--	--	--	--
231.61	0.712	5.38	--	0.789	--	--	--	0.365	21	--	--	--	--
229.49	0.706	5.36	--	--	-1.02	--	--	0.343	--	10	845	2.49	--
267.4	0.763	5.36	--	--	--	--	--	0.361	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	186.60	temperature	15.0	270	> th	dose independent	rect.	8	19
2	189.22	radiation	40.0	270	< th	dose dependent	rect.	3	6
3	189.26	wind	1.0	270	> th	dose independent	rect.	3	5
4	189.26	radiation	1.0	270	< th	dose independent	rect.	4	13
9	189.68	humidity	50.0	270	> th	dose dependent	rect.	3	5
13	190.04	radiation	20.0	270	< th	dose independent	rect.	3	5
16	190.19	humidity	70.0	270	> th	dose independent	rect.	3	5
19	190.33	radiation	1.0	270	< th	dose dependent	rect.	4	13
21	190.44	temperature	10.0	270	> th	dose dependent	rect.	19	8
22	190.48	atmosphere	995.0	270	> th	dose independent	rect.	8	19
26	190.64	wind	7.0	270	< th	dose independent	rect.	3	5
29	190.76	temperature	10.0	270	> th	dose independent	rect.	3	5
31	190.76	temperature	30.0	270	< th	dose independent	rect.	3	5
32	190.76	humidity	50.0	270	> th	dose independent	rect.	3	5
34	190.76	atmosphere	995.0	270	> th	dose independent	rect.	3	5
35	190.76	atmosphere	1015.0	270	< th	dose independent	rect.	3	5
46	191.30	precipitation	0.1	270	< th	dose independent	rect.	8	19
47	191.30	precipitation	0.1	270	< th	dose dependent	rect.	8	19
49	191.47	humidity	70.0	90	> th	dose dependent	rect.	5	14
56	191.76	humidity	90.0	90	< th	dose independent	rect.	9	7
60	191.83	precipitation	0.1	270	< th	dose independent	rect.	3	5
61	191.83	precipitation	0.1	270	< th	dose dependent	rect.	3	5
69	192.18	temperature	15.0	90	> th	dose independent	rect.	19	10
70	192.23	temperature	15.0	270	> th	dose independent	rect.	19	8
76	192.43	radiation	1.0	270	> th	dose independent	rect.	7	8
77	192.45	wind	9.0	270	< th	dose independent	rect.	8	19
78	192.45	radiation	30.0	90	< th	dose dependent	rect.	5	14
81	192.51	temperature	30.0	270	< th	dose dependent	rect.	3	4
83	192.56	wind	9.0	90	< th	dose independent	rect.	5	14
88	192.62	radiation	1.0	270	> th	dose independent	rect.	8	6
101	192.91	temperature	15.0	270	> th	dose independent	rect.	8	6
105	192.97	wind	7.0	270	< th	dose independent	rect.	14	18
110	193.03	humidity	80.0	270	> th	dose independent	rect.	3	13
114	193.08	humidity	70.0	90	> th	dose independent	rect.	19	10
119	193.17	humidity	50.0	270	> th	dose independent	rect.	8	19
133	193.48	radiation	1.0	90	< th	dose independent	rect.	19	10
135	193.51	radiation	20.0	4320	< th	dose independent	rect.	21	9
137	193.53	radiation	10.0	90	< th	dose dependent	rect.	19	10
141	193.60	radiation	10.0	270	< th	dose dependent	rect.	17	10
145	193.63	precipitation	0.1	90	< th	dose independent	rect.	19	10
146	193.63	precipitation	0.1	90	< th	dose dependent	rect.	19	10
148	193.65	temperature	30.0	90	< th	dose independent	rect.	19	10
149	193.65	humidity	50.0	90	> th	dose independent	rect.	19	10
151	193.65	atmosphere	995.0	90	> th	dose independent	rect.	19	10
155	193.65	temperature	10.0	90	> th	dose independent	rect.	5	14
156	193.65	atmosphere	1015.0	90	< th	dose independent	rect.	5	14
157	193.66	wind	7.0	270	< th	dose independent	rect.	4	3
161	193.69	precipitation	0.1	270	< th	dose independent	rect.	7	21
162	193.69	precipitation	0.1	270	< th	dose dependent	rect.	7	21
164	193.71	temperature	10.0	270	> th	dose independent	rect.	4	3
166	193.71	temperature	30.0	270	< th	dose independent	rect.	4	3
167	193.71	humidity	50.0	270	> th	dose independent	rect.	4	3
169	193.71	atmosphere	995.0	270	> th	dose independent	rect.	4	3
170	193.71	atmosphere	1015.0	270	< th	dose independent	rect.	4	3
172	193.71	atmosphere	1015.0	270	< th	dose independent	rect.	8	19
194	193.87	wind	9.0	90	< th	dose independent	rect.	19	10
209	194.04	precipitation	0.1	270	< th	dose independent	rect.	4	3
211	194.04	precipitation	0.1	270	< th	dose dependent	rect.	4	3
220	194.09	humidity	50.0	270	> th	dose independent	rect.	8	6
248	194.26	humidity	70.0	270	> th	dose dependent	rect.	3	14
261	194.36	wind	9.0	270	< th	dose dependent	rect.	3	5
354	194.74	wind	9.0	270	< th	dose independent	rect.	19	8
382	194.95	precipitation	0.1	270	< th	dose independent	rect.	8	6
384	194.95	precipitation	0.1	270	< th	dose dependent	rect.	8	6
392	195.00	wind	1.0	270	> th	dose independent	rect.	14	18
421	195.14	precipitation	0.1	90	< th	dose independent	rect.	5	14
422	195.14	precipitation	0.1	90	< th	dose dependent	rect.	5	14
429	195.18	wind	1.0	270	> th	dose independent	rect.	3	16
453	195.31	humidity	80.0	10	< th	dose independent	rect.	10	6
456	195.34	radiation	40.0	270	< th	dose independent	rect.	14	18
479	195.44	wind	9.0	270	< th	dose dependent	rect.	4	3
484	195.48	atmosphere	995.0	270	> th	dose independent	rect.	8	6
485	195.48	atmosphere	1015.0	270	< th	dose independent	rect.	8	6
487	195.48	temperature	10.0	270	> th	dose independent	rect.	14	18
501	195.56	radiation	10.0	10	< th	dose independent	rect.	20	10
527	195.70	wind	9.0	270	< th	dose independent	rect.	8	6
543	195.84	temperature	15.0	270	> th	dose independent	rect.	22	15
561	196.01	wind	1.0	270	> th	dose independent	rect.	8	6
569	196.09	wind	1.0	30	> th	dose independent	rect.	5	15
572	196.11	atmosphere	995.0	270	> th	dose dependent	rect.	3	5
581	196.13	wind	7.0	90	< th	dose independent	rect.	17	16
582	196.13	wind	1.0	270	> th	dose independent	rect.	8	19
591	196.17	radiation	20.0	10	< th	dose dependent	rect.	20	10
592	196.18	temperature	30.0	270	< th	dose independent	rect.	9	18
601	196.20	radiation	20.0	90	< th	dose independent	rect.	5	14
615	196.27	temperature	10.0	270	> th	dose dependent	rect.	19	19
621	196.30	radiation	20.0	10	< th	dose dependent	rect.	6	14
664	196.51	temperature	10.0	1440	> th	dose independent	rect.	21	9
667	196.51	temperature	30.0	1440	< th	dose independent	rect.	21	9
671	196.51	humidity	50.0	1440	> th	dose independent	rect.	21	9
677	196.51	atmosphere	995.0	1440	> th	dose independent	rect.	21	9
687	196.51	temperature	10.0	1440	> th	dose independent	rect.	6	15
706	196.62	atmosphere	1015.0	270	< th	dose independent	rect.	19	8
708	196.63	temperature	30.0	270	< th	dose dependent	rect.	5	1
721	196.73	humidity	90.0	270	< th	dose independent	rect.	9	4
727	196.76	wind	1.0	10	> th	dose independent	rect.	14	20
732	196.79	wind	5.0	270	< th	dose independent	rect.	5	1
743	196.83	atmosphere	995.0	270	> th	dose dependent	rect.	4	3
752	196.89	radiation	40.0	90	< th	dose independent	rect.	5	14
780	197.06	temperature	10.0	10	> th	dose dependent	rect.	20	10
788	197.08	temperature	10.0	270	> th	dose independent	rect.	5	1
790	197.08	temperature	30.0	270	< th	dose independent	rect.	5	1
791	197.08	humidity	50.0	270	> th	dose independent	rect.	5	1
795	197.08	atmosphere	1015.0	270	< th	dose independent	rect.	5	1
806	197.11	precipitation	0.1	270	< th	dose independent	rect.	14	18
808	197.11	precipitation	0.1	270	< th	dose dependent	rect.	14	18
823	197.15	wind	1.0	10	> th	dose independent	rect.	5	5
836	197.22	precipitation	0.1	270	< th	dose independent	rect.	5	1
838	197.22	precipitation	0.1	270	< th	dose dependent	rect.	5	1
906	197.57	temperature	15.0	10	> th	dose independent	rect.	20	10
951	197.81	wind	9.0	270	< th	dose dependent	rect.	5	1
959	197.84	atmosphere	1015.0	90	< th	dose independent	rect.	19	10