BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0551600 Os04g0551600|AK064637
         (124 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G02070.1  | chr1:370445-370947 REVERSE LENGTH=132               65   8e-12
AT3G60520.1  | chr3:22361751-22362467 REVERSE LENGTH=130           63   5e-11

>AT1G02070.1 | chr1:370445-370947 REVERSE LENGTH=132
          Length = 131

 Score = 65.1 bits (157), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 56/131 (42%), Gaps = 16/131 (12%)

Query: 7   VCSMCGDVGFPDKLFQCARCRYRFQHSYCTNXXXXXXXXXXXXXMCDWCLSD---VAGKA 63
           VC MCGDVGF DKLF C  CR RFQHSYC+N             +CDWC SD   ++  A
Sbjct: 4   VCCMCGDVGFSDKLFSCGHCRCRFQHSYCSN---YYGQFAEPTEICDWCRSDDRKLSNVA 60

Query: 64  RYSSAAGKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGT----------KAAG 113
           R+  ++ K+                                  +G           K A 
Sbjct: 61  RHGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQVAKGVAGDGGGVTSPKTAT 120

Query: 114 RRYKLLKDVLC 124
           RRYKLLKDV+C
Sbjct: 121 RRYKLLKDVMC 131



>AT3G60520.1 | chr3:22361751-22362467 REVERSE LENGTH=130
          Length = 129

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 52/125 (41%), Gaps = 10/125 (8%)

Query: 7   VCSMCGDVGFPDKLFQCARCRYRFQHSYCTNXXXXXXXXXXXXXMCDWCL----SDVAGK 62
           VC MCGDVGF DKLF C++C  RFQHSYC++             +CDWC     S    K
Sbjct: 8   VCCMCGDVGFFDKLFHCSKCLNRFQHSYCSS---YYKEQADPIKICDWCQCEAKSRTGAK 64

Query: 63  ARYSSAAGKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGT---KAAGRRYKLL 119
              +  + K+                                 + G    + A RRYKLL
Sbjct: 65  HGVNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATRRYKLL 124

Query: 120 KDVLC 124
           KDV+C
Sbjct: 125 KDVMC 129



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.329    0.137    0.473 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,684,699
Number of extensions: 36334
Number of successful extensions: 137
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 2
Length of query: 124
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 38
Effective length of database: 8,748,793
Effective search space: 332454134
Effective search space used: 332454134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 105 (45.1 bits)