BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0545700 Os04g0545700|Os04g0545700
         (383 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0545700  Transferase family protein                          655   0.0  
Os02g0653400  Transferase family protein                          245   5e-65

>Os04g0545700 Transferase family protein
          Length = 383

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/383 (88%), Positives = 340/383 (88%)

Query: 1   MAAMTATMIHVESMQTAVPTRITGAGRTLPVAVSGGEAPPPLTAASLQRRFRAVLYYRGI 60
           MAAMTATMIHVESMQTAVPTRITGAGRTLPVAVSGGEAPPPLTAASLQRRFRAVLYYRGI
Sbjct: 1   MAAMTATMIHVESMQTAVPTRITGAGRTLPVAVSGGEAPPPLTAASLQRRFRAVLYYRGI 60

Query: 61  EQLQAXXXXXXRAVWVKESLSASLADHPEMAXXXXXXXXXXXXXXXPWEVRLNDNGVRLV 120
           EQLQA      RAVWVKESLSASLADHPEMA               PWEVRLNDNGVRLV
Sbjct: 61  EQLQAEEEEEERAVWVKESLSASLADHPEMAGRLRRRDDDDGGVRGPWEVRLNDNGVRLV 120

Query: 121 QASVDMPMSAFLEAKDLARREAALTLWTDVDVHEPEFCAPFFMQLTRFQDGGYAIGASCS 180
           QASVDMPMSAFLEAKDLARREAALTLWTDVDVHEPEFCAPFFMQLTRFQDGGYAIGASCS
Sbjct: 121 QASVDMPMSAFLEAKDLARREAALTLWTDVDVHEPEFCAPFFMQLTRFQDGGYAIGASCS 180

Query: 181 LLLADPLSLVDFLKAWARTHAEMRARGKPVAPPAVIQYARYLQSPGAAAAAVVRRLKSVP 240
           LLLADPLSLVDFLKAWARTHAEMRARGKPVAPPAVIQYARYLQSPGAAAAAVVRRLKSVP
Sbjct: 181 LLLADPLSLVDFLKAWARTHAEMRARGKPVAPPAVIQYARYLQSPGAAAAAVVRRLKSVP 240

Query: 241 LDSCSXXXXXXXXXXXXXXXQVDRHALAAACVDQAVETLGGNARKPPRLTVLAAGGSGEL 300
           LDSCS               QVDRHALAAACVDQAVETLGGNARKPPRLTVLAAGGSGEL
Sbjct: 241 LDSCSAAAATTVLFRAAAGAQVDRHALAAACVDQAVETLGGNARKPPRLTVLAAGGSGEL 300

Query: 301 RVEACGCGDGEEXXXXXXXSRGHHALRAAYWGDLGLGEIALDGSEPVHVSCTVVSPCADE 360
           RVEACGCGDGEE       SRGHHALRAAYWGDLGLGEIALDGSEPVHVSCTVVSPCADE
Sbjct: 301 RVEACGCGDGEETTTPPPPSRGHHALRAAYWGDLGLGEIALDGSEPVHVSCTVVSPCADE 360

Query: 361 GLVVVMAPAGGAELLISVTVPNY 383
           GLVVVMAPAGGAELLISVTVPNY
Sbjct: 361 GLVVVMAPAGGAELLISVTVPNY 383



>Os02g0653400 Transferase family protein
          Length = 385

 Score =  245 bits (625), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 173/395 (43%), Positives = 218/395 (55%), Gaps = 44/395 (11%)

Query: 8   MIHVESMQTAVPTRITGAGRTLPVAVSGGEAPPPLTAASLQRRFRAVLYYRGIEQLQAXX 67
           ++H+E++QTAVPTR+   GRT  VAV+         A +LQRR RAVLYYR      A  
Sbjct: 15  VVHIEAVQTAVPTRVVEPGRTRLVAVAAPPL----PAPALQRRVRAVLYYR--GAGGAAP 68

Query: 68  XXXXRAVWVKESLSASLADHPEMAXXXXXXXXXXXXXXXPWEVRLNDNGVRLVQASVDMP 127
                 VWVKESLS +LADHPEMA                WEV+LND GVRL+QA+VD  
Sbjct: 69  GAWEDGVWVKESLSEALADHPEMAGRLRRRADGS------WEVKLNDTGVRLLQATVDAT 122

Query: 128 MSAFLEAKDLARREAALTL-WTDVDVHEPEFCAPFFMQLTRFQ-DGGYAIGASCSLLLAD 185
           +  FL  K    R  A    WTDV+  +P+ C PFFMQLTRFQ DGGYA+G SC+L+LAD
Sbjct: 123 LDEFLAGKGALARREAALAPWTDVNADDPDMCPPFFMQLTRFQGDGGYAVGVSCALVLAD 182

Query: 186 PLSLVDFLKAWARTHAEMRARGKPVAPPAVIQYARYLQSPGAAAAAVVRRLKSVPLDSCS 245
           PL+L  FL +WARTHA +RA+GK   P  + QY  Y Q P        +R++SVP+DS +
Sbjct: 183 PLTLARFLLSWARTHARIRAQGK-ATPLPMAQYLAYFQRP----ETTRKRVRSVPIDSFA 237

Query: 246 ----------XXXXXXXXXXXXXXXQVDRHALAAACVDQAVETLGGNARKPPRLTVL--- 292
                                      D  ALAAACVD+A E L G   K  RL+V+   
Sbjct: 238 GDGDGDAETVLFRAGTAAAAAADGGHGDHRALAAACVDKASEAL-GKKDKVSRLSVVVVD 296

Query: 293 AAGG----SGELRVEACGCGDGEEXXXXXXXSRGHHALRAAYWGDLGLGEIALDGSEPVH 348
           AAGG    +G+  +E C              + G  +L A  W +LGL E+ L GS+PVH
Sbjct: 297 AAGGDDSLAGKTTIETC------TASPGGGAAAGGASLEAVQWSELGLEELVLRGSKPVH 350

Query: 349 VSCTVVS-PCADEGLVVVMAPAGGAELLISVTVPN 382
           VSC++V+    DEGLVVVM   G   LL+  T+P 
Sbjct: 351 VSCSIVTGGGGDEGLVVVMPDDGAGSLLVMATLPK 385



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,107,895
Number of extensions: 539280
Number of successful extensions: 1616
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1610
Number of HSP's successfully gapped: 2
Length of query: 383
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 280
Effective length of database: 11,657,759
Effective search space: 3264172520
Effective search space used: 3264172520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)