Os02g0653400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transferase family protein.
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Os02g0653400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.46 | 0.507 | 6.93 | -0.363 | 1.11 | -1.83 | -0.417 | -0.21 | 0.773 | 1.89 | 11.6 | 76 | 8.17 | 20.3 |
| 116.45 | 0.503 | 6.93 | -0.366 | 1.11 | -1.83 | -0.383 | -- | 0.772 | 1.91 | 11.73 | 70 | 8.22 | 20.3 |
| 116.96 | 0.504 | 6.92 | -0.354 | 1.12 | -1.82 | -- | 0.00502 | 0.77 | 2.02 | 11.52 | 70 | 8.23 | 20.3 |
| 116.91 | 0.504 | 6.92 | -0.333 | 1.12 | -1.84 | -- | -- | 0.781 | 1.97 | 11.91 | 68 | 8.26 | 20.3 |
| 152.81 | 0.579 | 6.89 | -0.205 | -- | -2.38 | -- | 0.232 | 0.873 | -- | 15.41 | 71 | 8.22 | 18.6 |
| 171.18 | 0.613 | 6.93 | -0.635 | 1.88 | -- | -0.0473 | -- | 0.66 | 3.33 | -- | -- | -- | -- |
| 171.18 | 0.613 | 6.93 | -0.634 | 1.88 | -- | -- | -- | 0.66 | 3.33 | -- | -- | -- | -- |
| 147.69 | 0.566 | 6.88 | -0.171 | -- | -2.5 | -- | -- | 0.928 | -- | 16.89 | 17 | 8.81 | 18.1 |
| 119.57 | 0.509 | 6.91 | -- | 1.09 | -1.88 | -- | -- | 0.832 | 1.93 | 12.17 | 70 | 8.25 | 20.3 |
| 370.76 | 0.9 | 6.93 | -0.554 | -- | -- | -- | -- | 0.71 | -- | -- | -- | -- | -- |
| 181.77 | 0.631 | 6.92 | -- | 1.87 | -- | -- | -- | 0.731 | 3.33 | -- | -- | -- | -- |
| 148.32 | 0.567 | 6.88 | -- | -- | -2.51 | -- | -- | 0.936 | -- | 17.01 | 16 | 8.82 | 18.1 |
| 378.86 | 0.909 | 6.92 | -- | -- | -- | -- | -- | 0.771 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.65 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 51 | 126.60 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 83 | 129.40 | humidity | 90 | 10 | < th | dose dependent | rect. | 8 | 15 |
| 84 | 129.41 | humidity | 90 | 10 | < th | dose dependent | rect. | 8 | 18 |
| 87 | 129.56 | radiation | 10 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 94 | 129.73 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 100 | 129.90 | humidity | 60 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 136 | 131.02 | humidity | 80 | 90 | > th | dose independent | rect. | 5 | 14 |
| 140 | 131.16 | humidity | 80 | 90 | > th | dose independent | rect. | 5 | 12 |
| 141 | 131.16 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 21 |
| 145 | 131.29 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 175 | 132.22 | humidity | 60 | 10 | > th | dose dependent | sin | 23 | NA |
| 179 | 132.39 | humidity | 90 | 10 | < th | dose dependent | sin | 0 | NA |
| 192 | 132.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 290 | 134.41 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 295 | 134.47 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 6 |
| 299 | 134.51 | humidity | 80 | 10 | < th | dose independent | sin | 0 | NA |
| 321 | 134.77 | humidity | 70 | 10 | > th | dose independent | rect. | 12 | 21 |
| 326 | 134.84 | radiation | 1 | 270 | < th | dose independent | rect. | 3 | 15 |
| 334 | 134.94 | humidity | 90 | 10 | < th | dose dependent | rect. | 8 | 7 |
| 348 | 135.09 | humidity | 80 | 10 | > th | dose independent | sin | 0 | NA |
| 360 | 135.22 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 21 |
| 368 | 135.29 | humidity | 70 | 90 | > th | dose independent | rect. | 13 | 19 |
| 371 | 135.33 | radiation | 10 | 270 | > th | dose independent | rect. | 16 | 21 |
| 374 | 135.36 | wind | 1 | 90 | > th | dose independent | rect. | 4 | 4 |
| 419 | 135.82 | humidity | 80 | 90 | < th | dose independent | sin | 1 | NA |
| 420 | 135.84 | radiation | 10 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 429 | 135.89 | radiation | 20 | 90 | < th | dose independent | rect. | 5 | 3 |
| 479 | 136.44 | radiation | 10 | 270 | < th | dose dependent | sin | 2 | NA |
| 488 | 136.56 | radiation | 30 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 494 | 136.60 | radiation | 10 | 270 | < th | dose independent | rect. | 3 | 6 |
| 543 | 136.93 | humidity | 70 | 10 | > th | dose independent | rect. | 10 | 23 |
| 568 | 137.15 | wind | 1 | 270 | > th | dose independent | rect. | 4 | 1 |
| 589 | 137.37 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 15 |
| 611 | 137.53 | radiation | 10 | 270 | > th | dose independent | sin | 4 | NA |
| 631 | 137.68 | humidity | 50 | 90 | > th | dose dependent | rect. | 11 | 22 |
| 654 | 137.81 | humidity | 80 | 90 | < th | dose independent | rect. | 8 | 9 |
| 664 | 137.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 665 | 137.85 | humidity | 80 | 10 | < th | dose dependent | rect. | 16 | 23 |
| 700 | 138.17 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 702 | 138.18 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 730 | 138.39 | wind | 7 | 90 | < th | dose independent | rect. | 8 | 21 |
| 802 | 138.79 | radiation | 1 | 270 | > th | dose independent | rect. | 7 | 22 |
| 805 | 138.81 | radiation | 1 | 270 | > th | dose independent | rect. | 7 | 12 |
| 815 | 138.82 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 9 |
| 876 | 139.10 | humidity | 70 | 90 | > th | dose independent | rect. | 5 | 3 |
| 922 | 139.27 | radiation | 1 | 270 | > th | dose independent | sin | 1 | NA |
| 945 | 139.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 950 | 139.36 | humidity | 90 | 90 | < th | dose dependent | rect. | 16 | 23 |
| 986 | 139.51 | radiation | 10 | 90 | > th | dose independent | rect. | 8 | 10 |