BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0538700 Os04g0538700|AK105628
(520 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0538700 Conserved hypothetical protein 938 0.0
Os02g0644500 Conserved hypothetical protein 461 e-130
Os11g0162000 Similar to RNA-binding region RNP-1 (RNA recog... 124 2e-28
>Os04g0538700 Conserved hypothetical protein
Length = 520
Score = 938 bits (2425), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/520 (90%), Positives = 470/520 (90%)
Query: 1 MSSMSDSGTGGRGGAELMVEQFHLKVLHAVLAVRGPRPLQPAASASFRRRDRWFHLPLHD 60
MSSMSDSGTGGRGGAELMVEQFHLKVLHAVLAVRGPRPLQPAASASFRRRDRWFHLPLHD
Sbjct: 1 MSSMSDSGTGGRGGAELMVEQFHLKVLHAVLAVRGPRPLQPAASASFRRRDRWFHLPLHD 60
Query: 61 XXXXXXXXXXXXXXXXXXLVVDILLAHXXXXXXXXXXXXXEVVERWTVVCEPWPDAAAGE 120
LVVDILLAH EVVERWTVVCEPWPDAAAGE
Sbjct: 61 PQPPPAAEGVEAPEAGEPLVVDILLAHAAAGGGGGGGAGGEVVERWTVVCEPWPDAAAGE 120
Query: 121 GIPVNRAYKRCMTMLRSVYATLRFLPAYRVFRLLCANQSYNYEMVHRVGSFAVPLSRDEE 180
GIPVNRAYKRCMTMLRSVYATLRFLPAYRVFRLLCANQSYNYEMVHRVGSFAVPLSRDEE
Sbjct: 121 GIPVNRAYKRCMTMLRSVYATLRFLPAYRVFRLLCANQSYNYEMVHRVGSFAVPLSRDEE 180
Query: 181 AAMRSYQFVPVETQHGRLVVSVQYLPSLAAFNLEISSLSPSMLIADYVGSPAAEPMRAFP 240
AAMRSYQFVPVETQHGRLVVSVQYLPSLAAFNLEISSLSPSMLIADYVGSPAAEPMRAFP
Sbjct: 181 AAMRSYQFVPVETQHGRLVVSVQYLPSLAAFNLEISSLSPSMLIADYVGSPAAEPMRAFP 240
Query: 241 ASLTGATGSAFPQALSNQPQRPHSWATPALWPQAPRQQARFSPPHLLNASPTPSPPNFPS 300
ASLTGATGSAFPQALSNQPQRPHSWATPALWPQAPRQQARFSPPHLLNASPTPSPPNFPS
Sbjct: 241 ASLTGATGSAFPQALSNQPQRPHSWATPALWPQAPRQQARFSPPHLLNASPTPSPPNFPS 300
Query: 301 GYLQSRPKGGSAPMSIPQVGDRRSPIHRPITLPPTSPRRVGETGTSSAQQSPSERCPSFG 360
GYLQSRPKGGSAPMSIPQVGDRRSPIHRPITLPPTSPRRVGETGTSSAQQSPSERCPSFG
Sbjct: 301 GYLQSRPKGGSAPMSIPQVGDRRSPIHRPITLPPTSPRRVGETGTSSAQQSPSERCPSFG 360
Query: 361 RADGFRIMDPYASLSPGRKGKDTKDESGRFSALSSCDSPRQDDIDDADYPFAVDDVDTPS 420
RADGFRIMDPYASLSPGRKGKDTKDESGRFSALSSCDSPRQDDIDDADYPFAVDDVDTPS
Sbjct: 361 RADGFRIMDPYASLSPGRKGKDTKDESGRFSALSSCDSPRQDDIDDADYPFAVDDVDTPS 420
Query: 421 SQPGSSDGKEARDQASSSSHKSQDAAVGSLVHLLKTARPLRNSNCPXXXXXXXXXXXXXX 480
SQPGSSDGKEARDQASSSSHKSQDAAVGSLVHLLKTARPLRNSNCP
Sbjct: 421 SQPGSSDGKEARDQASSSSHKSQDAAVGSLVHLLKTARPLRNSNCPSQASAVESSEAAST 480
Query: 481 XXXXXRRKSDALEELQSFKEIKERLMSRSRAKQQEPPEKP 520
RRKSDALEELQSFKEIKERLMSRSRAKQQEPPEKP
Sbjct: 481 SSVVSRRKSDALEELQSFKEIKERLMSRSRAKQQEPPEKP 520
>Os02g0644500 Conserved hypothetical protein
Length = 544
Score = 461 bits (1185), Expect = e-130, Method: Compositional matrix adjust.
Identities = 306/542 (56%), Positives = 348/542 (64%), Gaps = 59/542 (10%)
Query: 16 ELMVEQFHLKVLHAVLAVRGPRPLQPAASA--SFRRRDRWFHLPLHDXXXXXXXXXXXXX 73
ELMV QFHLK LHA+LAVR PRPL A + SFRRRDRWFHLPLH
Sbjct: 19 ELMVPQFHLKALHAILAVRAPRPLAAAPAPAASFRRRDRWFHLPLHAPPPPASAEHLPEP 78
Query: 74 XXXXXLVVDILLAHXXXXXXXXXXXXXEVVERWTVVCEPW--------PDAAAGEGIPVN 125
LVVD+ L VVERWTV CEPW AA+GEG+ VN
Sbjct: 79 SPGEPLVVDVYLT-----PSGGGGGAEAVVERWTVSCEPWSAGARGGGGAAASGEGLAVN 133
Query: 126 RAYKRCMTMLRSVYATLRFLPAYRVFRLLCAN-QSYNYEMVHRVGSFAVPLSRDEEAAMR 184
RAYKRC+T+LRSVY LR LPAYRVFRLLCA+ Q+YNYEM RVGSFA P +R EEAAM
Sbjct: 134 RAYKRCITLLRSVYTALRLLPAYRVFRLLCASGQAYNYEMGFRVGSFAAPFTRAEEAAMS 193
Query: 185 SYQFVPVETQHGRLVVSVQYLPSLAAFNLEISSLSPSMLIADYVGSPAAEPMRAFPASLT 244
+ +F PVETQ GRLVVSVQYLPSLAAFNLEI SL+P+MLI DYVGSPAA+PMRAFPASLT
Sbjct: 194 TRRFAPVETQLGRLVVSVQYLPSLAAFNLEICSLAPAMLITDYVGSPAADPMRAFPASLT 253
Query: 245 GATGS--AFPQALSNQPQRPHSWA-TPALWPQAPRQQARFSPPHLLNASPTPSPPNFPSG 301
A S AFP P+RP+SWA +PA WP P QQA+FSPP L ASPTPSPP F G
Sbjct: 254 EAASSAPAFP------PRRPNSWAPSPAPWPYTPGQQAKFSPPPALYASPTPSPPTFAGG 307
Query: 302 YLQSRPKGGSAPMSIPQVGDRRSPIH--------RPITLPPTSPRRVGETGTSSAQQSPS 353
YLQSR G +APM IP G R P+H R LPP SP+ + G S ++P
Sbjct: 308 YLQSRLSGETAPMIIP--GGGRGPVHNRNMSDPVRGFMLPPPSPKNI--RGDSGGHETPM 363
Query: 354 ERCPSFGRADGFRIMDPYASL--SPGRKGKDTKDESGR--------------FSALSSCD 397
E GR G R+ D Y +L P K KD++DESGR FS SS
Sbjct: 364 ET----GRT-GIRMADLYTNLPSVPKIKIKDSRDESGRFSGVFSSSGSPRLGFSRSSSRL 418
Query: 398 SPRQDDIDDADYPFAVDDVDTPSSQPGSSDGKEARDQASSSSHKSQDAAVGSLVHLLKTA 457
S QDD DD D+PFAVDDVDTP S+PGSS GK+ DQASSSSHKSQDAAVG LVH+LK+A
Sbjct: 419 S-MQDDTDDLDFPFAVDDVDTPDSRPGSSGGKDVGDQASSSSHKSQDAAVGYLVHMLKSA 477
Query: 458 RPLRNSNCPXXXXXXXXXXXXXXXXXXXRRKSDALEELQSFKEIKERLMSRSRAKQQEPP 517
RPLR+S+ RR SDALEEL+SFKEIKE L++RSR++ QE
Sbjct: 478 RPLRDSSNSPLTSRVESVEGGNVSSFMSRRTSDALEELESFKEIKENLLARSRSRMQESL 537
Query: 518 EK 519
+K
Sbjct: 538 DK 539
>Os11g0162000 Similar to RNA-binding region RNP-1 (RNA recognition motif)
Length = 601
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 152/591 (25%), Positives = 237/591 (40%), Gaps = 107/591 (18%)
Query: 15 AELMVEQFHLKVLHAVLAVRGPRPLQPAASASFRR-------------RDRWFHLPLHDX 61
E ++ +F K LH +L R P +S +F R RDRWF+L L D
Sbjct: 10 VEQVITEFFAKSLHIILESRSPY----ESSRNFTRPSPPSSPLSGSQPRDRWFNLALRDC 65
Query: 62 XXXXXXXXXXXXXXXXXLVVDILLAHXXXXXXXXXXXXXEVVERWTVVCEPWPDA----- 116
LV+DI+L +++ERW + E
Sbjct: 66 PAVLENFDLWRQSNLEPLVIDIVLL-CRDSTSNTAAGSGKIIERWVIQYEARKSGGGNGN 124
Query: 117 -----------AAGEGIPVNRA-YKRCMTMLRSVYATLRFLPAYRVFRLLCANQSYN-YE 163
++ E + RA Y+ +LRS++ +R LPAY +FR L ++
Sbjct: 125 GSKNNGRKSRNSSAEDHSLYRATYQGSTVLLRSLHLLVRLLPAYSLFRELNSSGRIRPLN 184
Query: 164 MVHRVGSFAVPLSRDEEAAMRSYQFVPVETQHGRLVVSVQYLPSLAAFNL-EISSLSPSM 222
+ H++ SF P +R E+A M+ Y F P+ET GRL +SV Y+P L E +S P
Sbjct: 185 LSHKISSFVEPFTRAEDAEMKHYAFAPIETLFGRLSLSVSYVPVLEVVAASEPTSPMPPE 244
Query: 223 LIADYVGSPAAEPMRAFPASLTGATGSAFPQALSNQPQRPHSWA---------TPALWPQ 273
+I DYVGSP + ++ F SL A + A++ R HSW+ +P+ P
Sbjct: 245 IITDYVGSPTTDFLKKF-NSLPSAGIAPACAAMT----RRHSWSIEHGAGTSVSPS--PS 297
Query: 274 APRQQARFSP----PHLLNASPTPSPPN-----------FPSGYLQ-------------S 305
+ Q+R SP P ++ P N F Y +
Sbjct: 298 PTKAQSRGSPQLGVPLHVSLKTCSHPQNASSSGQKKYTPFEECYPSPPLSPSPSQSPSAN 357
Query: 306 RPKG-----GSAPMSIPQVGDRRSPIHRPITLPPTSPRRVGETGTSSAQQSPSERCPSFG 360
PK SAP++IP + P + + + + SP S
Sbjct: 358 YPKNPLFRYESAPVTIPTLKSGGGGGSGLPPSPCSKGKHQFSSHNDNLAHSPDHN--SNV 415
Query: 361 RADGFRIMDPYASLSPGRKGKDTKDESGRFSALSSCDSPRQ----DDIDDADYPFAVDDV 416
R D R+ + ++ + +K + G F L + + D++D+ + FA +D
Sbjct: 416 RKDLVRLGEFEKDMALQKVLSYSKYDLGYFHGLKLTRTSSKLFIMDELDEHELVFAWEDR 475
Query: 417 DTPSSQPGS---SDGKEARDQ-ASSSSHKSQDAAVGSLVHLLKTARPLRNSNCPXXXXXX 472
DT Q SD +E ++Q A SS +S AA+G+LVHLLKTA LR
Sbjct: 476 DTIIDQLNRADISDREEQKNQDAGGSSTRSPAAAIGALVHLLKTAPSLREGLQSDAAAVV 535
Query: 473 XXXXXXXXXXXXXRRKS-----------DALEELQSFKEIKERLMSRSRAK 512
S DALEEL+ ++E+KE +++R + +
Sbjct: 536 PQEPSSVQKVVTEEHGSIASSSTPVTATDALEELKKYREVKESILNRGKTQ 586
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,837,206
Number of extensions: 901199
Number of successful extensions: 4895
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 4879
Number of HSP's successfully gapped: 3
Length of query: 520
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 415
Effective length of database: 11,553,331
Effective search space: 4794632365
Effective search space used: 4794632365
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)