Os11g0162000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RNA-binding region RNP-1 (RNA recognition motif).
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Os11g0162000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RNA-binding region RNP-1 (RNA recognition motif).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.32 | 0.151 | 10.7 | 0.468 | 0.177 | -0.455 | -0.24 | -0.708 | -0.0309 | 4.17 | 6.527 | 150 | -- | -- |
| 10.6 | 0.152 | 10.7 | 0.57 | 0.184 | -0.452 | -0.0544 | -- | -0.0033 | 3.84 | 5.658 | 219 | -- | -- |
| 10.44 | 0.151 | 10.7 | 0.496 | 0.181 | -0.443 | -- | -0.493 | -0.0237 | 4.15 | 5.346 | 161 | -- | -- |
| 10.61 | 0.152 | 10.7 | 0.57 | 0.184 | -0.449 | -- | -- | -0.00327 | 3.82 | 6.489 | 219 | -- | -- |
| 11.67 | 0.159 | 10.7 | 0.537 | -- | -0.633 | -- | -0.537 | 0.00535 | -- | 14.56 | 161 | -- | -- |
| 12.69 | 0.167 | 10.7 | 0.475 | 0.312 | -- | 0.0241 | -- | -0.0664 | 4 | -- | -- | -- | -- |
| 12.69 | 0.167 | 10.7 | 0.475 | 0.313 | -- | -- | -- | -0.0666 | 4 | -- | -- | -- | -- |
| 11.54 | 0.158 | 10.7 | 0.591 | -- | -0.517 | -- | -- | 0.0258 | -- | 20.6 | 159 | -- | -- |
| 17.98 | 0.197 | 10.7 | -- | 0.253 | -0.178 | -- | -- | -0.0954 | 3.64 | 21.9 | 313 | -- | -- |
| 18.02 | 0.198 | 10.7 | 0.487 | -- | -- | -- | -- | -0.0582 | -- | -- | -- | -- | -- |
| 18.63 | 0.202 | 10.7 | -- | 0.322 | -- | -- | -- | -0.119 | 3.98 | -- | -- | -- | -- |
| 20.21 | 0.209 | 10.7 | -- | -- | -0.359 | -- | -- | -0.0789 | -- | 24.15 | 215 | -- | -- |
| 24.29 | 0.23 | 10.7 | -- | -- | -- | -- | -- | -0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 9.83 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 31 | 10.33 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 36 | 10.35 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 40 | 10.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 48 | 10.38 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 58 | 10.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 68 | 10.43 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 74 | 10.44 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 101 | 10.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 103 | 10.48 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 122 | 10.49 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 19 |
| 129 | 10.49 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 133 | 10.49 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 135 | 10.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 137 | 10.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 15 |
| 154 | 10.51 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 18 |
| 162 | 10.51 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 168 | 10.52 | temperature | 30 | 1440 | > th | dose independent | sin | 5 | NA |
| 184 | 10.53 | temperature | 30 | 1440 | < th | dose independent | sin | 5 | NA |
| 188 | 10.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 199 | 10.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 243 | 10.55 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 359 | 10.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 469 | 10.62 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 488 | 10.62 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 492 | 10.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 499 | 10.63 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 537 | 10.63 | temperature | 20 | 1440 | > th | dose dependent | rect. | 9 | 14 |
| 541 | 10.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 19 |
| 564 | 10.63 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 571 | 10.64 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 575 | 10.64 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 12 |
| 583 | 10.64 | temperature | 25 | 1440 | > th | dose dependent | sin | 23 | NA |
| 587 | 10.64 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 594 | 10.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 639 | 10.65 | radiation | 10 | 4320 | > th | dose independent | rect. | 17 | 14 |
| 647 | 10.65 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 652 | 10.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 732 | 10.65 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 851 | 10.67 | radiation | 10 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 872 | 10.67 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 954 | 10.68 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 12 |