Os04g0538700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0538700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.92 | 0.274 | 13.2 | 1.59 | 1.05 | -0.579 | -0.0768 | 0.0974 | 0.631 | 21.2 | 1.21 | 4304 | -- | -- |
| 33.94 | 0.271 | 13.2 | 1.59 | 1.06 | -0.585 | -0.0718 | -- | 0.626 | 21.2 | 1.213 | 4299 | -- | -- |
| 33.93 | 0.271 | 13.2 | 1.6 | 1.05 | -0.58 | -- | 0.114 | 0.631 | 21.2 | 1.25 | 4297 | -- | -- |
| 32.67 | 0.266 | 13.2 | 1.57 | 1.05 | -0.615 | -- | -- | 0.642 | 21.2 | 1.57 | 5725 | -- | -- |
| 71.25 | 0.395 | 13.2 | 1.44 | -- | -0.536 | -- | 0.0212 | 0.506 | -- | 1.51 | 4496 | -- | -- |
| 41.53 | 0.302 | 13.3 | 1.43 | 1.04 | -- | -0.081 | -- | 0.494 | 21.1 | -- | -- | -- | -- |
| 41.55 | 0.302 | 13.3 | 1.43 | 1.04 | -- | -- | -- | 0.494 | 21.1 | -- | -- | -- | -- |
| 71.08 | 0.394 | 13.2 | 1.43 | -- | -0.537 | -- | -- | 0.507 | -- | 1.57 | 5725 | -- | -- |
| 83.6 | 0.426 | 13.2 | -- | 1.05 | -0.669 | -- | -- | 0.543 | 21.2 | 40 | 8614 | -- | -- |
| 103.56 | 0.476 | 13.2 | 1.43 | -- | -- | -- | -- | 0.488 | -- | -- | -- | -- | -- |
| 95.44 | 0.457 | 13.3 | -- | 1.04 | -- | -- | -- | 0.335 | 21.2 | -- | -- | -- | -- |
| 125.3 | 0.523 | 13.3 | -- | -- | -0.536 | -- | -- | 0.348 | -- | 1.57 | 5725 | -- | -- |
| 157.65 | 0.586 | 13.3 | -- | -- | -- | -- | -- | 0.329 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.05 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 2 | 31.07 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 4 | 31.13 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 9 | 31.16 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 10 | 31.16 | wind | 3.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 16 | 31.22 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 32 | 31.25 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 8 |
| 45 | 31.32 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 70 | 31.41 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 107 | 31.51 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 130 | 31.56 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 150 | 31.59 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 151 | 31.59 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 160 | 31.60 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 22 | 9 |
| 161 | 31.60 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 186 | 31.64 | wind | 5.0 | 43200 | < th | dose dependent | sin | 5 | NA |
| 222 | 31.70 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 243 | 31.72 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 7 |
| 264 | 31.75 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 274 | 31.75 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 302 | 31.78 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 24 | 10 |
| 308 | 31.79 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 358 | 31.83 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 8 | 12 |
| 379 | 31.85 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 384 | 31.85 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 17 |
| 385 | 31.86 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 413 | 31.88 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 430 | 31.89 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 438 | 31.89 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 446 | 31.90 | wind | 1.0 | 43200 | > th | dose dependent | sin | 6 | NA |
| 493 | 31.93 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 561 | 31.98 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 584 | 31.99 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 597 | 32.00 | wind | 3.0 | 43200 | > th | dose independent | sin | 5 | NA |
| 598 | 32.00 | wind | 3.0 | 43200 | < th | dose independent | sin | 5 | NA |
| 608 | 32.00 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 20 | 12 |
| 666 | 32.03 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 676 | 32.03 | radiation | 30.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 677 | 32.03 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 746 | 32.07 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 772 | 32.07 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 5 | 22 |
| 829 | 32.10 | humidity | 80.0 | 14400 | > th | dose independent | sin | 22 | NA |
| 840 | 32.10 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 900 | 32.12 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 1 | 22 |
| 906 | 32.13 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 7 |
| 965 | 32.16 | humidity | 80.0 | 14400 | < th | dose independent | sin | 21 | NA |
| 971 | 32.16 | humidity | 80.0 | 14400 | > th | dose dependent | no | NA | NA |
| 974 | 32.16 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 19 | 4 |