BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0537100 Os04g0537100|AK108118
         (167 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0537100  Similar to Auxin-induced protein X15                210   3e-55
Os02g0643800  Auxin responsive SAUR protein family protein        115   1e-26

>Os04g0537100 Similar to Auxin-induced protein X15
          Length = 167

 Score =  210 bits (535), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 111/145 (76%), Positives = 111/145 (76%)

Query: 1   MLKRSHGGFRLGRKLLSXXXXXXXXXXXXXXXXXXLQTTSGGCGGACKEGSEEAKRLAPX 60
           MLKRSHGGFRLGRKLLS                  LQTTSGGCGGACKEGSEEAKRLAP 
Sbjct: 1   MLKRSHGGFRLGRKLLSAWRWALCCRRRRRRGYLRLQTTSGGCGGACKEGSEEAKRLAPV 60

Query: 61  XXXXXXXXXXXXXXXKDGGRRRILDEPVSTPKGQVAVYVGGGNPGESLRYVVPVVYFNHP 120
                          KDGGRRRILDEPVSTPKGQVAVYVGGGNPGESLRYVVPVVYFNHP
Sbjct: 61  LRWGRSLVRRLSLGRKDGGRRRILDEPVSTPKGQVAVYVGGGNPGESLRYVVPVVYFNHP 120

Query: 121 MFGELLREAEEEFGFQHPGGITIPC 145
           MFGELLREAEEEFGFQHPGGITIPC
Sbjct: 121 MFGELLREAEEEFGFQHPGGITIPC 145



>Os02g0643800 Auxin responsive SAUR protein family protein
          Length = 190

 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/70 (80%), Positives = 61/70 (87%), Gaps = 3/70 (4%)

Query: 79  GRRRILDEP---VSTPKGQVAVYVGGGNPGESLRYVVPVVYFNHPMFGELLREAEEEFGF 135
           G  R+L+E     +TPKGQVAVYVGGG PGES+RYVVPVVYFNHP+FGELLREAEEEFGF
Sbjct: 96  GSERLLEESPGEATTPKGQVAVYVGGGEPGESMRYVVPVVYFNHPLFGELLREAEEEFGF 155

Query: 136 QHPGGITIPC 145
            HPGGITIPC
Sbjct: 156 AHPGGITIPC 165



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.142    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,968,199
Number of extensions: 210287
Number of successful extensions: 377
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 3
Length of query: 167
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 74
Effective length of database: 12,179,899
Effective search space: 901312526
Effective search space used: 901312526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)