BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0534600 Os04g0534600|AK073835
         (222 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0534600  Peroxisomal biogenesis factor 11 family protein     421   e-118
Os03g0302000  Peroxisomal biogenesis factor 11 family protein     116   1e-26
Os03g0301950  Peroxisomal biogenesis factor 11 family protein      85   5e-17

>Os04g0534600 Peroxisomal biogenesis factor 11 family protein
          Length = 222

 Score =  421 bits (1081), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/222 (94%), Positives = 210/222 (94%)

Query: 1   MSAGDTLDKLVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSR 60
           MSAGDTLDKLVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSR
Sbjct: 1   MSAGDTLDKLVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSR 60

Query: 61  KAFRTGRFLTGLNGLRRAPGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLDAWLARRMS 120
           KAFRTGRFLTGLNGLRRAPGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLDAWLARRMS
Sbjct: 61  KAFRTGRFLTGLNGLRRAPGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLDAWLARRMS 120

Query: 121 FISAFGESVGYVFFIAMDLIMIRRGLRQERKLLRXXXXXXXXXXXXIRMDRVMRLMATAA 180
           FISAFGESVGYVFFIAMDLIMIRRGLRQERKLLR            IRMDRVMRLMATAA
Sbjct: 121 FISAFGESVGYVFFIAMDLIMIRRGLRQERKLLREGGKDKDKEVKKIRMDRVMRLMATAA 180

Query: 181 NVADLVIGIADIEPNPFCNHAVTLGISGLVSAWAGWYRNWPS 222
           NVADLVIGIADIEPNPFCNHAVTLGISGLVSAWAGWYRNWPS
Sbjct: 181 NVADLVIGIADIEPNPFCNHAVTLGISGLVSAWAGWYRNWPS 222



>Os03g0302000 Peroxisomal biogenesis factor 11 family protein
          Length = 242

 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 24/230 (10%)

Query: 5   DTLDKLVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSRKAFR 64
           D L  +  +L++RDG+DKL+K     +     AA    P  + R K++E+S GLSRKAFR
Sbjct: 24  DFLVHVEAYLSRRDGVDKLLK-ISRYAARLALAAGPLPPAASARLKSFESSVGLSRKAFR 82

Query: 65  TGRFLTGLNGLRRAPGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLDAWLARRMSFISA 124
            G+F+  +N LR  P    A+A+LA  GE VY+F + F WL++ G+L A L  R+  +SA
Sbjct: 83  LGKFVQNVNALRAHPHPPPAVALLAYGGEGVYYFLEQFVWLAKAGLLPAHLLPRLQRLSA 142

Query: 125 FGESVGYVFFIAMDL-----------IMIRRGLRQERKLLRXXXXXXXXXXXXIRMDRVM 173
           + E +GYV  I + L           + ++ G R+E  ++R            +R+  ++
Sbjct: 143 WAELLGYVGSITIKLEEIGKLESSVKMRLKEGCREESDVVR-----------TLRVKLLL 191

Query: 174 RLMATAANVADLVIGIADI-EPNPFCNHAVTLGISGLVSAWAGWYRNWPS 222
           + M+   +VAD V+ + D+ +       +  +  +GL+SA    ++NW S
Sbjct: 192 KRMSVVQDVADAVMALGDVTDGKGLLGSSTLMASAGLLSALISAHKNWNS 241



>Os03g0301950 Peroxisomal biogenesis factor 11 family protein
          Length = 254

 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 115/239 (48%), Gaps = 32/239 (13%)

Query: 5   DTLDKLVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSP---GLAGRAKNWETSAGLSRK 61
           D L  +  +L++RDG+D L+K   Y ++LA   A    P       R +++E+S GLSRK
Sbjct: 26  DILVHIEAYLSRRDGVDNLLKVSLYAARLALALAAGQPPLPHAATARLRSFESSVGLSRK 85

Query: 62  AFRTGRFLTGLNGLRRA-----PGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLDA-WL 115
           AFR G+F+  +N LR A     P     L +LA  G+ VY F + F WL++ G+L A  L
Sbjct: 86  AFRLGKFVQSINALRAAAYHPHPHVHPLLVLLAYGGQGVYNFLEQFAWLAKAGLLPARLL 145

Query: 116 ARRMSFISAFGESVGYVFFIAMDL-----------IMIRRGLRQERKLLRXXXXXXXXXX 164
            RR+  I  + + + +V  IA+ L             +  G  +E +++R          
Sbjct: 146 PRRLHRIGVWAQLLAHVGSIAIKLEEVAELECGVEARLEEGCGEESEVVR---------- 195

Query: 165 XXIRMDRVMRLMATAANVADLVIGIADIEPNP-FCNHAVTLGISGLVSAWAGWYRNWPS 222
             +    +++LM+   ++ D  + + D+         +  +  +GL+SA    ++NW S
Sbjct: 196 -TLSRKLLLKLMSLVQDMVDSAMTVGDVTGRKGLLGSSTLMASAGLLSALISVHKNWNS 253



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,631,610
Number of extensions: 229169
Number of successful extensions: 662
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 661
Number of HSP's successfully gapped: 3
Length of query: 222
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 125
Effective length of database: 11,971,043
Effective search space: 1496380375
Effective search space used: 1496380375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)