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Os04g0534600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peroxisomal biogenesis factor 11 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.6 (0.0206) R2 : 0.482
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.05 (0.051) R2dC : 0.483 R2C : 0.482
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00748 (0.0433) R2dN8 : 4.37e-05 R2N8 : -0.000168
σ : 0.388
deviance : 68.86
__
_____
C
peak time of C : 2.78
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.2 0.336 14.6 0.503 1.04 0.00593 -1.1 2.81 0.0498 2.72 9.993 722 -- --
58.53 0.359 14.6 0.541 1.3 -0.302 -0.237 -- 0.0699 2.13 9.993 722 -- --
52.96 0.339 14.6 0.511 1.05 0.181 -- 2.17 0.0601 2.49 29.97 1047 -- --
57.61 0.353 14.6 0.545 1.03 0.261 -- -- 0.0604 2.56 50.98 1232 -- --
69.96 0.39 14.5 0.213 -- 0.822 -- -0.329 -0.0221 -- 1.53 338 -- --
61.57 0.368 14.6 0.523 1.04 -- -0.0873 -- 0.0506 2.75 -- -- -- --
61.59 0.368 14.6 0.525 1.04 -- -- -- 0.051 2.78 -- -- -- --
61 0.364 14.6 0.56 -- 0.915 -- -- 0.0722 -- 1.51 402 -- --
64.51 0.374 14.6 -- 1.06 0.349 -- -- 0.0544 2.9 45.97 7581 -- --
124.49 0.521 14.6 0.57 -- -- -- -- 0.0776 -- -- -- -- --
68.86 0.388 14.6 -- 1.05 -- -- -- -0.00748 2.78 -- -- -- --
69.57 0.388 14.6 -- -- 0.916 -- -- 0.0329 -- 1.517 404 -- --
133.05 0.538 14.6 -- -- -- -- -- 0.0144 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.34 temperature 30.0 270 < th dose independent rect. 15 9
5 45.16 temperature 10.0 270 > th dose dependent rect. 11 9
8 45.27 atmosphere 1005.0 270 > th dose independent rect. 16 9
10 45.37 temperature 10.0 270 > th dose dependent rect. 12 17
11 45.49 temperature 20.0 270 > th dose independent rect. 11 7
12 45.53 radiation 1.0 30 < th dose dependent rect. 15 10
21 45.75 radiation 40.0 270 < th dose dependent rect. 15 10
22 45.77 humidity 50.0 270 > th dose independent rect. 16 9
30 45.88 radiation 1.0 270 > th dose independent rect. 11 8
47 45.96 atmosphere 995.0 90 > th dose dependent rect. 18 9
53 46.06 radiation 1.0 90 < th dose independent rect. 15 10
57 46.09 atmosphere 995.0 270 > th dose independent rect. 18 17
65 46.15 atmosphere 995.0 270 > th dose dependent rect. 16 9
71 46.20 radiation 1.0 270 > th dose independent sin 18 NA
76 46.22 atmosphere 1015.0 270 < th dose independent rect. 11 7
78 46.22 temperature 10.0 270 > th dose independent rect. 18 17
79 46.22 temperature 30.0 270 < th dose independent rect. 18 17
82 46.23 wind 1.0 270 > th dose independent rect. 11 7
84 46.23 wind 9.0 270 < th dose independent rect. 18 17
87 46.24 radiation 1.0 30 < th dose dependent sin 14 NA
89 46.25 wind 9.0 270 < th dose independent rect. 11 7
94 46.27 humidity 50.0 270 > th dose independent rect. 18 17
98 46.29 radiation 20.0 270 < th dose independent rect. 16 9
102 46.31 precipitation 0.1 270 < th dose independent rect. 11 7
103 46.31 precipitation 0.1 270 < th dose dependent rect. 11 7
130 46.50 temperature 30.0 90 < th dose dependent rect. 17 8
137 46.53 humidity 70.0 10 > th dose independent rect. 18 7
140 46.54 radiation 1.0 270 > th dose independent rect. 10 21
178 46.67 radiation 1.0 30 < th dose dependent rect. 6 19
205 46.79 temperature 30.0 270 < th dose dependent rect. 15 8
210 46.80 precipitation 0.1 270 < th dose independent rect. 18 17
211 46.80 precipitation 0.1 270 < th dose dependent rect. 18 17
229 46.91 radiation 1.0 90 < th dose independent sin 15 NA
230 46.91 temperature 10.0 1440 > th dose independent rect. 19 7
233 46.91 temperature 30.0 1440 < th dose independent rect. 19 7
237 46.91 humidity 50.0 1440 > th dose independent rect. 19 7
239 46.91 atmosphere 995.0 1440 > th dose independent rect. 19 7
240 46.91 radiation 1.0 1440 < th dose independent rect. 19 7
260 46.91 temperature 10.0 1440 > th dose independent rect. 2 17
263 46.91 radiation 10.0 1440 < th dose dependent rect. 19 7
285 47.01 radiation 1.0 270 < th dose independent sin 17 NA
299 47.06 radiation 1.0 270 < th dose dependent sin 18 NA
301 47.06 temperature 30.0 90 < th dose dependent rect. 15 10
306 47.08 atmosphere 995.0 270 > th dose independent rect. 16 9
323 47.13 wind 1.0 270 > th dose independent rect. 17 8
324 47.14 humidity 90.0 270 < th dose independent rect. 11 7
344 47.18 temperature 10.0 270 > th dose independent rect. 16 9
352 47.18 temperature 10.0 270 > th dose independent rect. 1 15
353 47.18 atmosphere 1015.0 270 < th dose independent rect. 1 15
363 47.21 temperature 15.0 270 > th dose independent rect. 5 8
368 47.22 wind 9.0 270 < th dose independent rect. 1 15
369 47.23 precipitation 0.1 270 < th dose independent rect. 1 15
372 47.23 precipitation 0.1 270 < th dose dependent rect. 1 15
374 47.25 precipitation 0.1 270 < th dose independent rect. 5 8
378 47.25 precipitation 0.1 270 < th dose dependent rect. 5 8
379 47.26 wind 9.0 270 < th dose independent rect. 16 9
392 47.28 atmosphere 995.0 270 > th dose independent rect. 5 8
393 47.28 atmosphere 1015.0 270 < th dose independent rect. 5 8
395 47.28 temperature 10.0 270 > th dose independent rect. 13 16
398 47.29 wind 9.0 270 < th dose independent rect. 5 8
410 47.33 wind 9.0 270 < th dose independent rect. 13 16
446 47.38 temperature 10.0 270 > th dose dependent sin 19 NA
515 47.52 precipitation 0.1 270 < th dose independent rect. 13 16
517 47.52 precipitation 0.1 270 < th dose dependent rect. 13 16
537 47.56 precipitation 0.1 270 < th dose independent rect. 16 9
541 47.56 precipitation 0.1 270 < th dose dependent rect. 16 9
574 47.64 atmosphere 1005.0 10 > th dose independent rect. 17 10
614 47.71 wind 1.0 270 > th dose dependent rect. 12 6
620 47.71 temperature 10.0 270 > th dose dependent rect. 24 17
635 47.74 atmosphere 995.0 270 > th dose independent rect. 1 15
714 47.92 radiation 40.0 270 < th dose independent rect. 18 17
762 48.00 temperature 30.0 270 < th dose independent rect. 7 15
799 48.06 atmosphere 995.0 270 > th dose independent rect. 11 7
809 48.07 humidity 50.0 270 > th dose independent rect. 24 15
820 48.09 radiation 1.0 270 > th dose independent rect. 5 8
837 48.10 humidity 50.0 90 > th dose dependent rect. 17 8
859 48.15 temperature 30.0 90 < th dose dependent sin 16 NA
902 48.21 radiation 40.0 270 < th dose dependent sin 15 NA
933 48.26 wind 1.0 270 > th dose independent rect. 5 8
959 48.29 temperature 30.0 720 < th dose independent rect. 13 6